Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31617
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)                    31   0.56 
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_6363| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_36772| Best HMM Match : WD40 (HMM E-Value=3.8e-05)                  27   9.2  
SB_6584| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.01)           27   9.2  
SB_3615| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
          Length = 2057

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +2

Query: 230 QEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPHGYKVRQPRLNHK 403
           QE   F+ +K+SD  ++        FDFD+ + V  +KE  K S      ++PR   K
Sbjct: 640 QENEEFLDIKVSDESLETPQFQVTRFDFDSNSEVEKNKESSKRSLREKAAKRPRPRRK 697


>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 65  RRVLGAAPKPFNQ--YTFIPSALDFYQTSARDPAFYQLYKRIVQYIIEFKQYQVPY 226
           R VL A  KP+    Y F  +ALD ++T  +D   Y  +   + +  EF Q  + Y
Sbjct: 182 RYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEY 237


>SB_6363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = +2

Query: 95  FNQYTFIPSALDFYQTSARDPAFYQLYKR-----IVQYIIEFKQYQVPYTQEALHFVGLK 259
           + QYT   + L + Q +     +   Y R       QY I + QY   YT+ ALH +   
Sbjct: 60  YRQYTSRNTLLAYTQYAIHYTQYATRYTRNALLAYTQYAINYTQYATCYTRNALHAIRFT 119

Query: 260 ISDVK 274
           +  ++
Sbjct: 120 LHAIR 124


>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3038

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 147 PGTQPSTSSIKGLFNTSSNL 206
           PG+QPST+S  GLF++  ++
Sbjct: 261 PGSQPSTNSNNGLFDSGEHV 280


>SB_36772| Best HMM Match : WD40 (HMM E-Value=3.8e-05)
          Length = 788

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 373 VTVRRALEFFFTEVDGVEGIEVEMVKECDHFVDFDVGNFQTNEVK 239
           V V RAL +      G+   E+E +  CD FV  DV  + T  V+
Sbjct: 167 VLVSRALGYVTAAKSGLTETELEDLLSCDDFVLDDVYQYWTPPVR 211


>SB_6584| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.01)
          Length = 742

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 147 PGTQPSTSSIKGLFNTSSNL 206
           PG+QPST+S  GLF++  ++
Sbjct: 389 PGSQPSTNSNNGLFDSGEHV 408


>SB_3615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 147 PGTQPSTSSIKGLFNTSSNL 206
           PG+QPST+S  GLF++  ++
Sbjct: 135 PGSQPSTNSNNGLFDSGEHV 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,595,076
Number of Sequences: 59808
Number of extensions: 246960
Number of successful extensions: 603
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)