Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31617
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83125-7|CAB05619.1| 407|Caenorhabditis elegans Hypothetical pr... 29 2.0
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 6.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 6.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 6.0
U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synt... 27 8.0
AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA sy... 27 8.0
>Z83125-7|CAB05619.1| 407|Caenorhabditis elegans Hypothetical
protein T15D6.9 protein.
Length = 407
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 221 PYTQEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSK 343
P+ + LH GL +S +DK+ ++F+F AFNT + K
Sbjct: 120 PHHKYILH--GLNLSAAYIDKLPRNDENFEFRAFNTSTYPK 158
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 355 LEFFFTEVDGVEGIEVEMVKECDHFV 278
+E FF++ + G+E++++ EC +V
Sbjct: 4718 VELFFSQAEVFSGLELDLLMECSEYV 4743
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 355 LEFFFTEVDGVEGIEVEMVKECDHFV 278
+E FF++ + G+E++++ EC +V
Sbjct: 4879 VELFFSQAEVFSGLELDLLMECSEYV 4904
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 355 LEFFFTEVDGVEGIEVEMVKECDHFV 278
+E FF++ + G+E++++ EC +V
Sbjct: 6161 VELFFSQAEVFSGLELDLLMECSEYV 6186
Score = 27.1 bits (57), Expect = 8.0
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 355 LEFFFTEVDGVEGIEVEMVKECDHFV 278
+E FF++ + G+E++++ EC +V
Sbjct: 5235 VELFFSKAEVFSGLELDLLMECSEYV 5260
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 355 LEFFFTEVDGVEGIEVEMVKECDHFV 278
+E FF++ + G+E++++ EC +V
Sbjct: 4718 VELFFSQAEVFSGLELDLLMECSEYV 4743
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 355 LEFFFTEVDGVEGIEVEMVKECDHFV 278
+E FF++ + G+E++++ EC +V
Sbjct: 4879 VELFFSQAEVFSGLELDLLMECSEYV 4904
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 355 LEFFFTEVDGVEGIEVEMVKECDHFV 278
+E FF++ + G+E++++ EC +V
Sbjct: 6181 VELFFSQAEVFSGLELDLLMECSEYV 6206
Score = 27.1 bits (57), Expect = 8.0
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 355 LEFFFTEVDGVEGIEVEMVKECDHFV 278
+E FF++ + G+E++++ EC +V
Sbjct: 5235 VELFFSKAEVFSGLELDLLMECSEYV 5260
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 355 LEFFFTEVDGVEGIEVEMVKECDHFV 278
+E FF++ + G+E++++ EC +V
Sbjct: 4718 VELFFSQAEVFSGLELDLLMECSEYV 4743
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 355 LEFFFTEVDGVEGIEVEMVKECDHFV 278
+E FF++ + G+E++++ EC +V
Sbjct: 4879 VELFFSQAEVFSGLELDLLMECSEYV 4904
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 355 LEFFFTEVDGVEGIEVEMVKECDHFV 278
+E FF++ + G+E++++ EC +V
Sbjct: 6181 VELFFSQAEVFSGLELDLLMECSEYV 6206
Score = 27.1 bits (57), Expect = 8.0
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -3
Query: 355 LEFFFTEVDGVEGIEVEMVKECDHFV 278
+E FF++ + G+E++++ EC +V
Sbjct: 5235 VELFFSKAEVFSGLELDLLMECSEYV 5260
>U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna
synthetase protein 1 protein.
Length = 441
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 166 VEGWVPGRSLVEVKSTRNKCVLVERLRSSTKY 71
+E W+PGR L S+ + C + R KY
Sbjct: 345 IEAWMPGRKLYGEVSSASNCTDFQSRRLGIKY 376
>AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA
synthetase protein.
Length = 441
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 166 VEGWVPGRSLVEVKSTRNKCVLVERLRSSTKY 71
+E W+PGR L S+ + C + R KY
Sbjct: 345 IEAWMPGRKLYGEVSSASNCTDFQSRRLGIKY 376
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,147,200
Number of Sequences: 27780
Number of extensions: 194160
Number of successful extensions: 588
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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