Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31617
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74800.1 68414.m08666 galactosyltransferase family protein co...    33   0.086
At5g49060.1 68418.m06070 DNAJ heat shock N-terminal domain-conta...    31   0.46 
At4g04710.1 68417.m00692 calcium-dependent protein kinase, putat...    28   3.2  
At5g64570.1 68418.m08115 glycosyl hydrolase family 3 protein           27   5.7  
At5g05480.1 68418.m00590 expressed protein                             27   5.7  

>At1g74800.1 68414.m08666 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 672

 Score = 33.5 bits (73), Expect = 0.086
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -3

Query: 421 NCHSERLVV-KTWLTD-LVTVRRALEFFFTEVDGVEGIEVEMVKECDHFVD 275
           N  SER+ V K+W+   L+T  + +  FF  + G + + VE+ KE ++F D
Sbjct: 434 NHFSERMAVRKSWMQHVLITSAKVVARFFVALHGRKEVNVELKKEAEYFGD 484


>At5g49060.1 68418.m06070 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|Q9QYI4
           DnaJ homolog subfamily B member 12 {Mus musculus};
           contains Pfam profile PF00226: DnaJ domain
          Length = 354

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 293 FFDHFD-FDAFNTVYFSKEELKSSPHGYKVRQPRLNHKPFTVTIDIKSDVATNAVVKMFL 469
           F D FD  + F TV+  + E+  + H Y+ RQPR   +   + +   S +    ++  FL
Sbjct: 189 FDDEFDPEEIFRTVFGQQREVFRASHAYRTRQPRNQFREEEINVAGPSCLTIIQILPFFL 248


>At4g04710.1 68417.m00692 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Nicotiana tabacum] gi|3283996|gb|AAC25423;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 575

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/64 (18%), Positives = 32/64 (50%)
 Frame = +2

Query: 236 ALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPHGYKVRQPRLNHKPFTV 415
           AL  +   +S+ ++  + T F++ D D   ++ + + ++  + HG K+ +  +      V
Sbjct: 321 ALKVIAEGLSEEEIKGLKTMFENMDMDKSGSITYEELKMGLNRHGSKLSETEVKQLMEAV 380

Query: 416 TIDI 427
           + D+
Sbjct: 381 SADV 384


>At5g64570.1 68418.m08115 glycosyl hydrolase family 3 protein 
          Length = 784

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 337 EVDGVEGIEVEMVKECDHFVDFDVGNFQTNEVKSFLCVWYLVLFKFDDVLNNPF 176
           E DG +   +++   C H+  +DV N++  E  SF  V  +     DD    PF
Sbjct: 209 ETDGGDSNRLKVAACCKHYTAYDVDNWKGVERYSFNAV--VTQQDMDDTYQPPF 260


>At5g05480.1 68418.m00590 expressed protein
          Length = 608

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 27/78 (34%), Positives = 35/78 (44%)
 Frame = -3

Query: 337 EVDGVEGIEVEMVKECDHFVDFDVGNFQTNEVKSFLCVWYLVLFKFDDVLNNPFIELVEG 158
           ++DG   +E E+  E D +V    GN  T  VKS   V  LV F+      N   + VE 
Sbjct: 405 QLDGSFKVEAEVSSEYDGWVRSSKGNL-TTMVKSMFKVDSLVRFE-----KNGTYKRVEQ 458

Query: 157 WVPGRSLVEVKSTRNKCV 104
            V    +VEV S   K V
Sbjct: 459 RVKTERIVEVTSESGKPV 476


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,529,318
Number of Sequences: 28952
Number of extensions: 180689
Number of successful extensions: 513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)