Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31616
(322 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 49 2e-07
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 2.1
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 24 5.0
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 24 5.0
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 24 6.6
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 24 6.6
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 24 6.6
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha... 23 8.7
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 23 8.7
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 23 8.7
>SPBC4C3.07 |||translation initiation factor
eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 49.2 bits (112), Expect = 2e-07
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Frame = +1
Query: 40 ADQVEAELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREP----- 204
++QVE E+ Y +Y L+ + N E +VGW+AT ++ S++I Y+ EP
Sbjct: 76 SEQVEVEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPA-EPGTAPL 134
Query: 205 -------VHVTLDTSLAGGRMGLRAYVCVPLGVPNG-KQGCMFTP 315
VH+T++T ++ + ++ YV P+G+ C F P
Sbjct: 135 GTYPHPCVHLTVNTDVS-SPLAIKTYVSSPVGITERLADSCAFVP 178
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 2.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 110 LKVLLVGGRLAMK*PTTPLLYTSITPV 190
LKV V +++ PTTP +Y S TPV
Sbjct: 376 LKVAPVSELISVIPPTTPQIYISRTPV 402
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 24.2 bits (50), Expect = 5.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 138 SRPPTNNTFRGIDSSVQLVN 79
SR PT+N+ I+SSV L+N
Sbjct: 4 SRCPTDNSSSRINSSVPLIN 23
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 24.2 bits (50), Expect = 5.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 91 NRRVNSSESIVGWWATGNEVTNHSSVIHE 177
NR +N + + ++TGNEVT SS + E
Sbjct: 8 NRSLNPTRGL-NLYSTGNEVTWFSSTVDE 35
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 23.8 bits (49), Expect = 6.6
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +2
Query: 158 TPLLYTSITPVNAVSLSMLLWTLHWLEV 241
+P+ YT T N S LW W+++
Sbjct: 209 SPIFYTHFTSKNYSFFSEGLWFTRWMQL 236
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 23.8 bits (49), Expect = 6.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -3
Query: 278 PNGTQTYARKPIRPPASEVSRVTWTGSR 195
P+ T Y R PPA + + WTG +
Sbjct: 718 PDETGMYGRIKTLPPAIQRPGIYWTGKQ 745
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 23.8 bits (49), Expect = 6.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 219 GHFTGWRSNGFTCICLCTIRSAKWKARLHVH 311
G+ T WR+ F C L + +AK A + ++
Sbjct: 235 GNSTNWRTFFFLCCLLSPLLTAKLPAAIFMY 265
>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
Exg3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 464
Score = 23.4 bits (48), Expect = 8.7
Identities = 13/57 (22%), Positives = 24/57 (42%)
Frame = +1
Query: 82 YELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGL 252
Y VNS +G+W+ GN+ + E Y+ R +H+ + G + +
Sbjct: 76 YMKQHLVNSVRIPLGYWSLGNDELVKGTPF-EPYAEVYRNSLHILCEKIQEAGSLSI 131
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 23.4 bits (48), Expect = 8.7
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -2
Query: 84 VNIHRVIKFRFDL 46
+NIH V++ RFDL
Sbjct: 779 MNIHEVLRLRFDL 791
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 23.4 bits (48), Expect = 8.7
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -3
Query: 290 PFGTPNGTQTYARKPIRPPASEVSRVTWTGSRHSRE*YSCITEEWLVTSL 141
P G+ +Q A I S +T G S YS TEE L+T L
Sbjct: 903 PTGSYEVSQPLANVTILGLTESPSSITLNGQNVSSFQYSNDTEELLITGL 952
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,610
Number of Sequences: 5004
Number of extensions: 27223
Number of successful extensions: 71
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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