Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31616
         (322 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    44   2e-05
U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding pro...    26   5.3  
U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.        26   5.3  
AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and gl...    26   5.3  
AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and gl...    26   5.3  

>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 14/106 (13%)
 Frame = +1

Query: 43  DQVEAELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECRE------- 201
           D +E +  +   +    ++ + +E  VGW+ T +++T+   + H+YY R   E       
Sbjct: 65  DDLEIDDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIYHDYYVRVITEASARRES 124

Query: 202 -PVHV-TLDTSLAGG---RMGLRAYVCVPLGVPN--GKQGCMFTPV 318
            P+ V T+DT+ +G    RM +RAY+    G+P   G    +F P+
Sbjct: 125 PPIVVLTIDTTFSGDMSKRMPVRAYLRSKAGIPGAAGPHCAIFNPL 170


>U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding
           protein LAG-1 protein.
          Length = 673

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 41  PIKSKRNLITRWMFTS*TEESIPLKVLLV 127
           P+   RN  T WMFT+ T   + + + LV
Sbjct: 615 PVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


>U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.
          Length = 673

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 41  PIKSKRNLITRWMFTS*TEESIPLKVLLV 127
           P+   RN  T WMFT+ T   + + + LV
Sbjct: 615 PVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


>AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform b protein.
          Length = 671

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 41  PIKSKRNLITRWMFTS*TEESIPLKVLLV 127
           P+   RN  T WMFT+ T   + + + LV
Sbjct: 613 PVSQVRNEQTHWMFTNRTTGDVEVPISLV 641


>AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform a protein.
          Length = 673

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 41  PIKSKRNLITRWMFTS*TEESIPLKVLLV 127
           P+   RN  T WMFT+ T   + + + LV
Sbjct: 615 PVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,126,846
Number of Sequences: 27780
Number of extensions: 159587
Number of successful extensions: 361
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)