Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31616
         (322 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   2.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   2.8  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   3.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   3.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   6.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   8.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   8.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    20   8.4  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    20   8.4  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    20   8.4  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    20   8.4  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    20   8.4  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 64  NYAMDVYELNRRVNSSE 114
           NY  DVY+ N  V+S E
Sbjct: 7   NYYGDVYQWNHTVSSGE 23


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 100 VNSSESIVGWWATGNEVTNHSSVIHEYYSR 189
           V SSE  + W A   E+   S ++  Y  R
Sbjct: 430 VKSSELSISWDAPITEIGGDSDLVERYEVR 459


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 206 SMLLWTLHWLEVEWV 250
           + +L T  WL++EWV
Sbjct: 30  NQILTTNAWLKLEWV 44


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 206 SMLLWTLHWLEVEWV 250
           + +L T  WL++EWV
Sbjct: 30  NQILTTNAWLKLEWV 44


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 206 SMLLWTLHWLEVEWV 250
           + +L T  WL++EWV
Sbjct: 30  NQILTTNAWLKLEWV 44


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 206 SMLLWTLHWLEVEWV 250
           + +L T  WL++EWV
Sbjct: 30  NQILTTNAWLKLEWV 44


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 206 SMLLWTLHWLEVEWV 250
           + +L T  WL++EWV
Sbjct: 30  NQILTTNAWLKLEWV 44


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 206 SMLLWTLHWLEVEWV 250
           + +L T  WL++EWV
Sbjct: 30  NQILTTNAWLKLEWV 44


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 206 SMLLWTLHWLEVEWV 250
           + +L T  WL++EWV
Sbjct: 98  NQILTTNAWLKLEWV 112


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 206 SMLLWTLHWLEVEWV 250
           + +L T  WL++EWV
Sbjct: 98  NQILTTNAWLKLEWV 112


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 206 SMLLWTLHWLEVEWVYVHM 262
           + LL T  WL++EW  V+M
Sbjct: 67  NQLLITNLWLKLEWNDVNM 85


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 249 FTCICLCTIRSAKWKARLHVH 311
           + CI    + SA+  ARL+V+
Sbjct: 469 YKCIAASKVGSAEHSARLNVY 489


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +1

Query: 52  EAELNYAMDVYELNRRVNSSESIVGWWATGNE 147
           E +L+Y M+  ELN        ++ +W + ++
Sbjct: 218 EYKLDYFMEDVELNAYYYYMREMLPYWMSSSQ 249


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +1

Query: 52  EAELNYAMDVYELNRRVNSSESIVGWWATGNE 147
           E +L+Y M+  ELN        ++ +W + ++
Sbjct: 218 EYKLDYFMEDVELNAYYYYMREMLPYWMSSSQ 249


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 147 SNQPLLCYTRVLLP*MP*ACPCYSGHF 227
           +N   LCY    +  +P   P Y G+F
Sbjct: 97  NNYKQLCYNINYIEQIPVPVPVYYGNF 123


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 147 SNQPLLCYTRVLLP*MP*ACPCYSGHF 227
           +N   LCY    +  +P   P Y G+F
Sbjct: 97  NNYKQLCYNINYIEQIPVPVPVYYGNF 123


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 147 SNQPLLCYTRVLLP*MP*ACPCYSGHF 227
           +N   LCY    +  +P   P Y G+F
Sbjct: 97  NNYKQLCYNINYIEQIPVPVPVYYGNF 123


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 147 SNQPLLCYTRVLLP*MP*ACPCYSGHF 227
           +N   LCY    +  +P   P Y G+F
Sbjct: 97  NNYKQLCYNINYIEQIPVPVPVYYGNF 123


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 147 SNQPLLCYTRVLLP*MP*ACPCYSGHF 227
           +N   LCY    +  +P   P Y G+F
Sbjct: 97  NNYKQLCYNINYIEQIPVPVPVYYGNF 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,784
Number of Sequences: 438
Number of extensions: 1860
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)