Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31616
(322 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 73 3e-14
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 42 9e-05
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 42 1e-04
At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni... 31 0.13
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 29 0.53
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 29 0.69
At4g15240.1 68417.m02336 fringe-related protein + weak similarit... 28 1.6
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 28 1.6
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 28 1.6
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 28 1.6
At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containi... 26 4.9
At5g60150.1 68418.m07540 expressed protein ; expression supporte... 26 4.9
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t... 26 4.9
At2g34940.1 68415.m04289 vacuolar sorting receptor, putative sim... 26 4.9
At5g50380.1 68418.m06240 exocyst subunit EXO70 family protein co... 26 6.5
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 26 6.5
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 26 6.5
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 26 6.5
At5g13780.1 68418.m01607 GCN5-related N-acetyltransferase, putat... 25 8.6
At4g03000.2 68417.m00408 expressed protein contains similarity t... 25 8.6
At4g03000.1 68417.m00407 expressed protein contains similarity t... 25 8.6
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (... 25 8.6
At2g03505.1 68415.m00310 glycosyl hydrolase family protein 17 si... 25 8.6
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom... 25 8.6
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 73.3 bits (172), Expect = 3e-14
Identities = 30/75 (40%), Positives = 51/75 (68%)
Frame = +1
Query: 40 ADQVEAELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTL 219
+DQV +++Y ++ + +VNS E+IVGW++TG V SS+IH++Y+RE P+H+T+
Sbjct: 80 SDQVAVDIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTV 139
Query: 220 DTSLAGGRMGLRAYV 264
DT G ++A+V
Sbjct: 140 DTGFTNGEGTIKAFV 154
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 41.9 bits (94), Expect = 9e-05
Identities = 19/69 (27%), Positives = 36/69 (52%)
Frame = +1
Query: 64 NYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGR 243
NY ++ + +R+N+ E IVGW++TG ++ + +H ++ PV V +D
Sbjct: 80 NYHESMFHMFKRINAKEHIVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELG 139
Query: 244 MGLRAYVCV 270
+ +AY V
Sbjct: 140 IPTKAYYAV 148
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/69 (26%), Positives = 36/69 (52%)
Frame = +1
Query: 64 NYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGR 243
NY ++ + +R+N+ E +VGW++TG ++ + +H ++ PV V +D
Sbjct: 80 NYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELG 139
Query: 244 MGLRAYVCV 270
+ +AY V
Sbjct: 140 IPTKAYYAV 148
>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6B) identical to COP9 signalosome subunit 6
[Arabidopsis thaliana] GI:17940314, CSN complex subunit
6B [Arabidopsis thaliana] GI:18056667; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
CSN complex subunit 6B (CSN6B) GI:18056666
Length = 317
Score = 31.5 bits (68), Expect = 0.13
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 85 ELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 231
EL ++V ++GW++TG++ T IH+ PV+V L+ ++
Sbjct: 98 ELYKKVFPDFYVLGWYSTGSDATESDMHIHKALMDINESPVYVLLNPAI 146
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 29.5 bits (63), Expect = 0.53
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 85 ELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 231
EL ++V I+GW++TG++ IH+ PV+V L+ ++
Sbjct: 98 ELYKKVFPDFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPAI 146
>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
similarity to fimbrin-like protein AtFim2 [Arabidopsis
thaliana] GI:2737926; contains Pfam profile PF00307:
Calponin homology (CH) domain
Length = 654
Score = 29.1 bits (62), Expect = 0.69
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = -2
Query: 162 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 58
G+V + ++S+PP F+ +++ Q+V + + +KF
Sbjct: 436 GIVNWKVSSKPPIKLPFKKVENCNQVVKLGKQLKF 470
>At4g15240.1 68417.m02336 fringe-related protein + weak similarity
to Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 488
Score = 27.9 bits (59), Expect = 1.6
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +1
Query: 16 SACHTKXHADQVEAELNYAMDVYELNRRVN---SSESIVGWWATGNEV-TNHSSVIHEYY 183
S C+ + V YA+ VYE N+ + + + W G+ V +N+ EY
Sbjct: 333 SVCYDSLNTVTVSVVWGYAVQVYEGNKLLPDLLTLQKTFSTWRRGSGVQSNYMFSTREYP 392
Query: 184 SRECREPVHVTLDTSLAGGRMG 249
C P+ LD+ + G G
Sbjct: 393 RDPCGRPLVFFLDSVGSDGTEG 414
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 170 YTSITPVNAVSLSMLL 217
YT++ PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 170 YTSITPVNAVSLSMLL 217
YT++ PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 170 YTSITPVNAVSLSMLL 217
YT++ PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 611
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 161 PLLYTSITPVNAVSLSMLLWTLHWLEVEWVYVHM 262
P+L + NA+ L+ + TL W V WV+V +
Sbjct: 335 PVLEPDLVVYNAI-LNACVPTLQWKAVSWVFVEL 367
>At5g60150.1 68418.m07540 expressed protein ; expression supported
by MPSS
Length = 1195
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -3
Query: 320 STGVNMQPCFPFGTPNGTQTYARKPIRPPASEVSRVTWTGSRHSR 186
S G + C P P ++ P RPP S + RVT T + +
Sbjct: 29 SRGKSYLKCSPLQIPRSSRIV---PTRPPFSPIGRVTGTSNNREQ 70
>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893
Length = 687
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 141 ASRPPTNNTFRGIDSSVQLVNIHRVIKF 58
AS+PP FR +++ Q++ I + +KF
Sbjct: 441 ASKPPIKMPFRKVENCNQVIKIGKQLKF 468
>At2g34940.1 68415.m04289 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 618
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 127 WWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 231
WW + S+ + YSREC E + +L SL
Sbjct: 298 WWDYVTDFNIRCSMKEKKYSRECAETIVESLGLSL 332
>At5g50380.1 68418.m06240 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 683
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 97 RVNSSESIVGWWATGNEVTNHSS 165
R+ ++ES++ W GN+ + HSS
Sbjct: 79 RLEAAESVIHRWDGGNDSSRHSS 101
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -3
Query: 320 STGVNMQPCFPFGTPNGTQT--YARKPIRPPASEVSRVTWTGSRHSR 186
+T + C P P T + + +P PP +S +T TG H R
Sbjct: 71 TTNTGHRHCRPPSNPATTNSGHHQLRPPPPPPPPLSAITTTGHHHHR 117
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 170 YTSITPVNAVSLSMLL 217
YT++ PVNAV++S LL
Sbjct: 258 YTTVVPVNAVAMSPLL 273
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 43 DQVEAE-LNYAMDVYELNRRVNSSESIVGWW 132
+++EA+ NY +++ R VN + VGW+
Sbjct: 75 EEIEADGANYQLEMMRCLREVNVDNNTVGWY 105
>At5g13780.1 68418.m01607 GCN5-related N-acetyltransferase, putative
similar to SP|P07347 N-terminal acetyltransferase
complex ARD1 subunit (Arrest-defective protein 1)
{Saccharomyces cerevisiae}; contains Pfam profile
PF00583: acetyltransferase, GNAT family
Length = 192
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 171 YNRGVVGYFIASRPPTNNTFRGIDSSVQLVNIHR 70
YN +VGY +A +N G +S+ ++ HR
Sbjct: 49 YNGRIVGYVLAKMEEESNECHGHITSLAVLRTHR 82
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 197 RHSRE*YSCITEEWLVTSLPVAHQ 126
+ RE C++EE V LP AHQ
Sbjct: 755 KRERECVMCLSEEMSVIFLPCAHQ 778
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 197 RHSRE*YSCITEEWLVTSLPVAHQ 126
+ RE C++EE V LP AHQ
Sbjct: 755 KRERECVMCLSEEMSVIFLPCAHQ 778
>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
identical to ataxia-telangiectasia mutated protein (Atm)
[Arabidopsis thaliana] GI:7529272; contains Pfam profile
PF00855: PWWP domain; contains GA donor splice site at
exon 73
Length = 3255
Score = 25.4 bits (53), Expect = 8.6
Identities = 8/39 (20%), Positives = 18/39 (46%)
Frame = +1
Query: 64 NYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEY 180
NY + Y+L + ++G W +N +++ +Y
Sbjct: 3138 NYILHNYQLKEEASDIYRVIGKWLAETRSSNSRTILEKY 3176
>At2g03505.1 68415.m00310 glycosyl hydrolase family protein 17
similar to Glucan endo-1,3-beta-glucosidase precursor
(EC 3.2.1.39) ((1-3)-beta- glucan endohydrolase)
((1-3)-beta-glucanase) (Beta-1,3- endoglucanase)
(Swiss-Prot:P52409) [Triticum aestivum]; similar to beta
1,3-glucanase (GI:924953) [Triticum aestivum]
Length = 168
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 284 GTPNGTQTYARKPIRPPASE 225
GTP+GTQT+ P PA +
Sbjct: 120 GTPSGTQTFPGPPAFGPAGD 139
>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
domain-containing protein contains Pfam profiles
PF00168: C2 domain; contains PF02893: GRAM domain;
similar to Chain A, Crystal Structure Of Synaptotagmin
Iii C2aC2B Length(GI:6980525); similar to Synaptotagmin
III (SytIII) (Swiss-Prot:P40748) [Rattus norvegicus]
Length = 1859
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 197 RHSRE*YSCITEEWLVTSLPVAHQ 126
+ RE C++EE V LP AHQ
Sbjct: 763 KRERECVMCLSEEMSVIFLPCAHQ 786
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,679,189
Number of Sequences: 28952
Number of extensions: 149753
Number of successful extensions: 369
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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