Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31613
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    97   7e-22
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    25   6.1  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   6.1  
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    24   8.0  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 97.5 bits (232), Expect = 7e-22
 Identities = 42/97 (43%), Positives = 60/97 (61%)
 Frame = +1

Query: 13  IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDAN 192
           + FDSY++P  +++    R L+VD               T+ DVIHS  +PSLG+K D  
Sbjct: 137 VSFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPSLGIKCDCI 196

Query: 193 PGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVIE 303
           P RLNQ +  I+R G+F+GQCSE+CG  HS +PIV++
Sbjct: 197 PSRLNQVSLSIDREGLFYGQCSELCGVLHSSMPIVVQ 233


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/37 (21%), Positives = 22/37 (59%)
 Frame = -2

Query: 119 RIWLFIGKIIRLSTSNSRNSLFFISLDGIIYESNSIL 9
           ++W+   +I  +S +NSR ++  +  DG++    +++
Sbjct: 21  KVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLM 57


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 88  DYLHLIVGIHYFLFHWMGLY 29
           D+  L++GIH F +H   LY
Sbjct: 398 DFWSLVIGIHVFGYHVYWLY 417


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 8/37 (21%), Positives = 22/37 (59%)
 Frame = -2

Query: 119 RIWLFIGKIIRLSTSNSRNSLFFISLDGIIYESNSIL 9
           ++W+   +I  +S +NSR ++  +  DG++    +++
Sbjct: 21  KVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLM 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,431,619
Number of Sequences: 5004
Number of extensions: 23909
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)