Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31613
         (411 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       129   8e-31
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       129   8e-31
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        78   2e-15

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  129 bits (312), Expect = 8e-31
 Identities = 57/97 (58%), Positives = 71/97 (73%)
 Frame = +1

Query: 13  IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDAN 192
           +EFDSY++P+ ++   +FRLL+VD               TA DVIHS  +P+L VK+DA 
Sbjct: 126 LEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAV 185

Query: 193 PGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVIE 303
           PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIVIE
Sbjct: 186 PGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIE 222


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  129 bits (312), Expect = 8e-31
 Identities = 57/97 (58%), Positives = 71/97 (73%)
 Frame = +1

Query: 13  IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDAN 192
           +EFDSY++P+ ++   +FRLL+VD               TA DVIHS  +P+L VK+DA 
Sbjct: 126 LEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAV 185

Query: 193 PGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIVIE 303
           PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIVIE
Sbjct: 186 PGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIE 222


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 36/77 (46%), Positives = 48/77 (62%)
 Frame = +1

Query: 13  IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDAN 192
           +EFDSY++P+ ++   +FRLL+VD               TA DVIHS  +P+L VK+DA 
Sbjct: 126 LEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAV 185

Query: 193 PGRLNQTNFFINRPGIF 243
           PGRLNQT FFI +   F
Sbjct: 186 PGRLNQTGFFIKKTWSF 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,700,638
Number of Sequences: 59808
Number of extensions: 151848
Number of successful extensions: 201
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)