Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31612
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   3.7  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   4.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   4.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   4.9  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = +1

Query: 370 YAGIIQLLLVTQCESLCLSFKRKLDLQMSYCXNVFSRKVSIPPMT 504
           + G+    L T C+ L +S  +K+   + +  ++  R     P+T
Sbjct: 119 FGGVRDHNLTTLCQELGISVVQKVSHTLYHLQDIIDRNGGRAPLT 163


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +3

Query: 309 YFLKHKHRYEXYNVNLSYIPVRWYHP 386
           Y    KH  + Y +N +  P   Y+P
Sbjct: 294 YRTDRKHTQQHYQMNQNMYPGEMYNP 319



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 149 SILYPHLNLHS 181
           S++YPHLN  S
Sbjct: 242 SVMYPHLNRSS 252


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +3

Query: 309 YFLKHKHRYEXYNVNLSYIPVRWYHP 386
           Y    KH  + Y +N +  P   Y+P
Sbjct: 242 YRTDRKHTQQHYQMNQNMYPGEMYNP 267



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 149 SILYPHLNLHS 181
           S++YPHLN  S
Sbjct: 190 SVMYPHLNRSS 200


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +3

Query: 309 YFLKHKHRYEXYNVNLSYIPVRWYHP 386
           Y    KH  + Y +N +  P   Y+P
Sbjct: 425 YRTDRKHTQQHYQMNQNMYPGEMYNP 450



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 149 SILYPHLNLHS 181
           S++YPHLN  S
Sbjct: 373 SVMYPHLNRSS 383


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,163
Number of Sequences: 336
Number of extensions: 2206
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)