Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31612
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)                      30   1.3  
SB_31361| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_46020| Best HMM Match : PHD (HMM E-Value=9.3e-12)                   27   6.9  

>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
          Length = 399

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 328 CLCFRKYILCYXC*NLIVK*HLYF 257
           CLCF   ++CY C  L+V  +L F
Sbjct: 123 CLCFTLLVMCYLCCTLLVMDYLCF 146



 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 325 LCFRKYILCYXC*NLIVK*HLYF--MYQGLLQFMVKKRSYSYEVL 197
           LCF   ++CY C  L+V  +L F  +  G L F +    Y    L
Sbjct: 274 LCFTLLVMCYLCCTLLVMDYLCFTLLVMGYLCFTLLLMGYKCSTL 318


>SB_31361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 494 GIDTFRLKTLXQYDICKSNFLLKLRQRDSHWVTNSN 387
           G++   L T  Q+ +C+  F   L     HWV  SN
Sbjct: 11  GLEDTTLGTTLQFSVCREEFAQILHTGQCHWVAVSN 46


>SB_46020| Best HMM Match : PHD (HMM E-Value=9.3e-12)
          Length = 824

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -2

Query: 500 IGGIDTFRLKTLXQYDICKSNFLLKLRQRDSHWVTNSNWMIPAY 369
           I G+    L  +  +D+  S F+  L     HWV  S    P Y
Sbjct: 690 IEGLQRPTLGRVRNFDVVSSEFIQILHTGSDHWVCGSTLGCPGY 733


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,049,297
Number of Sequences: 59808
Number of extensions: 220224
Number of successful extensions: 341
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)