Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31612
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.9  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   3.3  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   7.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   7.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   10.0 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   10.0 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   10.0 

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 311 IYIVLXLLKFNCKMTFVFY 255
           +Y+V   LK +C M F+ Y
Sbjct: 152 LYMVKLTLKLSCAMNFLIY 170


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 225 LTMNCNKP*YIKYKCHFT 278
           L MN N+P Y+  KC  T
Sbjct: 152 LPMNRNRPAYLASKCALT 169


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 171 IYIQLTINFSTSYEYERFLTMNCNKP 248
           IY+ L++   TSY     +  NC  P
Sbjct: 8   IYLFLSVILITSYFVTPVMPCNCKAP 33


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 360 YIPVRWYHPITVGHPMRI 413
           Y+P RW  P T   P+ +
Sbjct: 439 YLPERWTTPTTPHSPLLV 456


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 130 TXLSFWLHPLSAFKFTFN*QLILALHM 210
           T L+F+L   S  K T +  ++++LH+
Sbjct: 262 TVLTFYLPSDSGEKVTLSISILISLHV 288


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 130 TXLSFWLHPLSAFKFTFN*QLILALHM 210
           T L+F+L   S  K T +  ++++LH+
Sbjct: 262 TVLTFYLPSDSGEKVTLSISILISLHV 288


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/43 (20%), Positives = 21/43 (48%)
 Frame = +3

Query: 192 NFSTSYEYERFLTMNCNKP*YIKYKCHFTIKF*QX*HNIYFLK 320
           + S +Y+Y  +   N N   Y  Y  ++   + +  +NI +++
Sbjct: 317 SLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIE 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,911
Number of Sequences: 438
Number of extensions: 2624
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)