Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31611
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   2.2  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    27   2.2  
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi...    26   2.9  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    26   3.8  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   5.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.1  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   5.1  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   6.7  
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   6.7  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   6.7  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   8.9  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    25   8.9  

>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 328 NKEAIADAEEGGDDQEFECVVTKEVSLSEISDKTGSI 438
           NK+ +++     DD E    +   ++LS IS K GSI
Sbjct: 61  NKQILSERSVTRDDYEKGKTIVSSLALSSISGKDGSI 97


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 173 VRRRKESRG*KPSP*PTRLKTRITMEGPISKWLTPK 280
           VR RK SR  KP+  P +L+T +  +  I++  TPK
Sbjct: 288 VRFRKMSRKRKPTLLPLKLQTPVPSDIEIARSQTPK 323


>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
           Tom22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 296 KIPSCASESTTSISALPL*SWSLIWLATVMAFILSTPFAFS 174
           KI   A  +TT +S L       +W+ +  A +L  PF  S
Sbjct: 69  KIADGAKTATTGLSKLAQFGGKSMWVISTSALLLGVPFMMS 109


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 456 GESGYPDAASLIGDLTQGHLLR 391
           G  GY D+++++ D+ Q HL++
Sbjct: 229 GRGGYFDSSTIVRDIVQNHLVQ 250


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 254 PISKWLTPKRTMESSTGSSMPSAPATRRPSLMPKKGATIKS 376
           P    LT  +T  SST  ++P  PA+R   + PK+G  I S
Sbjct: 215 PALSMLT-SQTSSSST-LNLPPEPASREVKIFPKQGKRIFS 253


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 385  VVTKEVSLSEISDKTGSIRITRLPAPLKKEQLNTDECYV 501
            V+T    LSE+ +K  S+R   +   L  E LN  + ++
Sbjct: 1211 VITTYTHLSEVENKKYSLRFNSIDEALDVELLNRSKAFL 1249


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 220 NQIKDQDHNGRADIEVVDSEAHDGIF 297
           N + D+ HN  +D E V+  AH+  F
Sbjct: 297 NLLGDEVHNPFSDFETVEDRAHEAEF 322


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
 Frame = +1

Query: 190  VERMKAITVANQIKDQDHNGRADIEVVDSEAHDGIFDRFFDALGSGNKEAIADAEEGGDD 369
            +E  KA +  N I+++ H+G  + +V+DS       D + DA        IA  ++ G  
Sbjct: 770  IEFFKAGSALNLIREKAHSGVVNQKVIDSIKQQP--DHYADAYIFNRHFVIAKGDQLGLP 827

Query: 370  QEFECV-VTKEVSLSEISDKTGSIRITRLPAPLKKEQLNTDECYVL 504
               + V V   + L +I+   GS   T    P     L T E  VL
Sbjct: 828  FHLKGVQVGDTIRLDKIA-SFGSRDFTLFGNPYVDPSLFTIEAVVL 872


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 456 GESGYPDAASLIGDLTQGHLLR 391
           G  GY + A ++ D+ Q HLL+
Sbjct: 220 GRGGYFEGAGILRDVVQNHLLQ 241


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
 Frame = -1

Query: 477 LLLLKRRGESGYPDAASLIGDLTQGHLLRDDAFKLLIVAPFFG-----ISDGLLVAGAEG 313
           LL+  R G+ GY     L    ++   L DD      V  F+      + DG      EG
Sbjct: 391 LLVNPRTGKHGYVAKFYLEPATSENRTLIDDYDLEDGVVRFYDYCNDKMKDGYFYIDIEG 450

Query: 312 IEEPVEDSIVRFGVNHF 262
              P ED++  FG++ F
Sbjct: 451 YLIPDEDAVYEFGISVF 467


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 318 EGIEEPVEDSIVRFGVNHFDIGPSIVILVFNLVG 217
           EG E  + DSI RF + +FD G   +++   L G
Sbjct: 836 EGNEIAIADSIGRFTIMYFD-GQKFIVVARYLFG 868


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 88  KQVKPTFESLNNGDCFILDVDHQI 159
           ++V    + LNNGD F+L+V   +
Sbjct: 110 REVTTIVKDLNNGDSFVLNVTEPV 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,006
Number of Sequences: 5004
Number of extensions: 34553
Number of successful extensions: 144
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)