Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31611
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.3  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/45 (20%), Positives = 24/45 (53%)
 Frame = +1

Query: 67  GKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKAKGVERM 201
           G  N+ + + +   + L + DC +  ++ ++FV  G+ A  + ++
Sbjct: 61  GSTNIGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKL 105


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 275 PKRTMESSTGSSMP 316
           P ++ ESSTGSS+P
Sbjct: 355 PPKSSESSTGSSIP 368


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/35 (22%), Positives = 21/35 (60%)
 Frame = +1

Query: 49  DSSXIKGKRNVRVKQVKPTFESLNNGDCFILDVDH 153
           DSS I+  +N+++ +       +NN + +I++ ++
Sbjct: 172 DSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNY 206


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/35 (22%), Positives = 21/35 (60%)
 Frame = +1

Query: 49  DSSXIKGKRNVRVKQVKPTFESLNNGDCFILDVDH 153
           DSS I+  +N+++ +       +NN + +I++ ++
Sbjct: 172 DSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNY 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.134    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,648
Number of Sequences: 438
Number of extensions: 2229
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)