Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31611
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57320.1 68418.m07160 villin, putative similar to villin 2 (V... 71 4e-13
At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to vil... 70 1e-12
At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to vil... 69 2e-12
At4g30160.1 68417.m04289 villin, putative similar to villin 2 (... 64 4e-11
At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to vil... 62 2e-10
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i... 29 1.9
At2g15980.1 68415.m01829 pentatricopeptide (PPR) repeat-containi... 29 1.9
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 29 2.5
At5g14520.1 68418.m01702 pescadillo-related similar to pescadill... 28 3.2
At3g03650.1 68416.m00368 exostosin family protein contains Pfam ... 28 3.2
At1g35720.1 68414.m04440 annexin 1 (ANN1) identical to annexin (... 28 3.2
At3g55540.1 68416.m06167 nuclear transport factor 2 (NTF2) famil... 27 5.7
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 27 7.5
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei... 27 7.5
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 27 7.5
At5g63740.1 68418.m08000 zinc finger protein-related 27 9.9
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf... 27 9.9
At5g04870.1 68418.m00510 calcium-dependent protein kinase isofor... 27 9.9
At4g24175.1 68417.m03469 expressed protein 27 9.9
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 27 9.9
At2g25660.1 68415.m03075 expressed protein 27 9.9
At1g22430.1 68414.m02804 alcohol dehydrogenase, putative similar... 27 9.9
>At5g57320.1 68418.m07160 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 962
Score = 71.3 bits (167), Expect = 4e-13
Identities = 54/156 (34%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Frame = +1
Query: 64 KGKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVANQIKDQDH 243
KGK VRVK+V +LN+ D FILD + +IF F G K+ ER KA+ V IKD H
Sbjct: 145 KGKHVVRVKEVPFVRSTLNHEDVFILDTESKIFQFSGSKSSIQERAKALEVVQYIKDTYH 204
Query: 244 NGRADIEVVD-----SEAHDGIFDRFFDALGS-GNKEAIADAEEGGDDQEFECVVTKEVS 405
+G+ DI V+ ++A G F F K A+ D E D
Sbjct: 205 DGKCDIAAVEDGRMMADAEAGEFWGLFGGFAPLPKKPAVNDDETAASD-----------G 253
Query: 406 LSEISDKTGSIRITRLPAPLKKEQLNTDECYVLDTG 513
+ S + G L KE L+T++CY+LD G
Sbjct: 254 IKLFSVEKGQTDAVEAEC-LTKELLDTNKCYILDCG 288
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 103 TFESLNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVANQIKDQD 240
T + L D FILD ++FV+VG++ ++ +A+ + D
Sbjct: 645 TQDDLMTEDIFILDCHTEVFVWVGQQVDPKKKPQALDIGENFLKHD 690
Score = 28.3 bits (60), Expect = 3.2
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +1
Query: 103 TFESLNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVANQIKDQDHNGRADIEVVDSEA 282
T E L+ C+ILD ++FV+ G +R A A + ++++ V
Sbjct: 273 TKELLDTNKCYILDCGLELFVWKGRSTSIDQRKSATEAAEEFFRSSEPPKSNLVSVMEGY 332
Query: 283 HDGIFDRFFDALGSGNKEAIADAEEG 360
+F FD+ + + IA+ ++G
Sbjct: 333 ETVMFRSKFDSWPASS--TIAEPQQG 356
>At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to villin
3 (VLN3) [Arabidopsis thaliana] GI:3415117
Length = 965
Score = 69.7 bits (163), Expect = 1e-12
Identities = 51/151 (33%), Positives = 71/151 (47%)
Frame = +1
Query: 64 KGKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVANQIKDQDH 243
KGKR V +KQV SLN+ D FILD +I+ F G + ER KA+ V +KD+ H
Sbjct: 145 KGKRAVHLKQVPFARSSLNHDDVFILDTKEKIYQFNGANSNIQERAKALVVIQYLKDKFH 204
Query: 244 NGRADIEVVDSEAHDGIFDRFFDALGSGNKEAIADAEEGGDDQEFECVVTKEVSLSEISD 423
G +D+ +VD D D + G IA D+ E T L I+D
Sbjct: 205 EGTSDVAIVDDGKLDTESDSGEFWVLFGGFAPIARKVASEDEIIPE---TTPPKLYSIAD 261
Query: 424 KTGSIRITRLPAPLKKEQLNTDECYVLDTGS 516
++ + L K L ++CY+LD GS
Sbjct: 262 G----QVESIDGDLSKSMLENNKCYLLDCGS 288
Score = 33.9 bits (74), Expect = 0.065
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +1
Query: 115 LNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVANQIKDQDHNGRAD-IEVVDSEAHDG 291
L N C++LD +IF++VG + ER AI A ++ +A I V
Sbjct: 276 LENNKCYLLDCGSEIFIWVGRVTQVEERKTAIQAAEDFVASENRPKATRITRVIQGYEPH 335
Query: 292 IFDRFFDALGSGNKEAIADAEEG 360
F FD+ SG+ A EEG
Sbjct: 336 SFKSNFDSWPSGS--ATPANEEG 356
Score = 33.9 bits (74), Expect = 0.065
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 67 GKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVANQIK 231
G N + QV+ SLN+ DCF+L +F++VG + ++ A VA +K
Sbjct: 529 GVHNNKALQVEAVATSLNSYDCFLLQSGTSMFLWVGNHSTHEQQELAAKVAEFLK 583
>At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to villin
2 (VLN2) [Arabidopsis thaliana] GI:3415115
Length = 976
Score = 68.9 bits (161), Expect = 2e-12
Identities = 50/151 (33%), Positives = 70/151 (46%)
Frame = +1
Query: 64 KGKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVANQIKDQDH 243
KGKR +R+KQV SLN+ D FILD + +I+ F G + ER KA+ V +KD+ H
Sbjct: 143 KGKRAIRLKQVPFARSSLNHDDVFILDTEEKIYQFNGANSNIQERAKALEVVQYLKDKYH 202
Query: 244 NGRADIEVVDSEAHDGIFDRFFDALGSGNKEAIADAEEGGDDQEFECVVTKEVSLSEISD 423
G D+ +VD D D + G I DD E K L I+D
Sbjct: 203 EGTCDVAIVDDGKLDTESDSGAFWVLFGGFAPIGRKVANDDDIVPESTPPK---LYCITD 259
Query: 424 KTGSIRITRLPAPLKKEQLNTDECYVLDTGS 516
++ + L K L +CY+LD G+
Sbjct: 260 G----KMEPIDGDLSKSMLENTKCYLLDCGA 286
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 67 GKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVANQIK 231
G N + QV+ SLN+ +CF+L +F++ G ++ + A VA +K
Sbjct: 527 GVHNNKAVQVETVATSLNSYECFLLQSGTSMFLWHGNQSTHEQLELATKVAEFLK 581
>At4g30160.1 68417.m04289 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 974
Score = 64.5 bits (150), Expect = 4e-11
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
Frame = +1
Query: 64 KGKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVANQIKDQDH 243
+GK V VK+V SLN+ D +ILD +IF F G + ER KA+ V IKD H
Sbjct: 145 RGKHVVHVKEVPFARSSLNHDDIYILDTKSKIFQFNGSNSSIQERAKALEVVQYIKDTYH 204
Query: 244 NGRADIEVVD-----SEAHDGIFDRFFDALGSGNKEAIADAEEGGDDQEFECVVTKEVSL 408
+G ++ V+ ++A G F FF ++ D ++ + ++
Sbjct: 205 DGTCEVATVEDGKLMADADSGEFWGFFGGFAPLPRKTANDEDKTYNSDITRLFCVEKGQA 264
Query: 409 SEISDKTGSIRITRLPAPLKKEQLNTDECYVLDTG 513
+ + T LK+E L+T++CY+LD G
Sbjct: 265 NPVEGDT-----------LKREMLDTNKCYILDCG 288
Score = 35.9 bits (79), Expect = 0.016
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +1
Query: 103 TFESLNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVANQIKDQDH-----NGRADIEV 267
T + L D FI+D +IFV+VG++ ++ A+T+ + ++D + A I V
Sbjct: 643 TQDDLMTEDIFIIDCHSEIFVWVGQEVVPKNKLLALTIGEKFIEKDSLLEKLSPEAPIYV 702
Query: 268 VDSEAHDGIFDRFFDALGS 324
+ F RFF + S
Sbjct: 703 IMEGGEPSFFTRFFTSWDS 721
>At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to villin
1 (VLN1) [Arabidopsis thaliana] GI:3415113
Length = 909
Score = 62.5 bits (145), Expect = 2e-10
Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 2/153 (1%)
Frame = +1
Query: 64 KGKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVANQIKDQDH 243
KG VRVK+V SLN+ D FILD ++F+F G + E+ KA+ V IKD H
Sbjct: 144 KGDHVVRVKEVPFLRSSLNHDDVFILDTASKVFLFAGCNSSTQEKAKAMEVVEYIKDNKH 203
Query: 244 NGRADIEVVDSEAHDGIFD--RFFDALGSGNKEAIADAEEGGDDQEFECVVTKEVSLSEI 417
+GR ++ ++ G D F+ G A + E T L I
Sbjct: 204 DGRCEVATIEDGKFSGDSDAGEFWSFFG-----GYAPIPKLSSSTTQEQTQTPCAELFWI 258
Query: 418 SDKTGSIRITRLPAPLKKEQLNTDECYVLDTGS 516
D G++ T + L K+ L ++CY+LD S
Sbjct: 259 -DTKGNLHPTG-TSSLDKDMLEKNKCYMLDCHS 289
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/69 (18%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 109 ESLNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVANQ-IKDQDHNGRADIEVVDSEAH 285
+ L C++LD ++FV++G ER +I+ + + ++ + + + ++
Sbjct: 275 DMLEKNKCYMLDCHSEVFVWMGRNTSLTERKTSISSSEEFLRKEGRSTTTSLVLLTEGLE 334
Query: 286 DGIFDRFFD 312
+ F FF+
Sbjct: 335 NARFRSFFN 343
>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
identical to cDNA CIP4.1 mRNA for COP1-interacting
protein 4.1, GI:13160649
Length = 976
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +1
Query: 178 KAKGVERMKAITVANQIKDQDHNGRADIEVVDSEAHDGIFDRFFDALGSGNKEAIADAEE 357
K K + K + + D I+VVD E HD + D+L N EA + E+
Sbjct: 608 KKKSSRKAKTPAKEDTLVDSGAQNVEPIKVVDGEGHDNVIRNVLDSLQQRN-EAEENMEK 666
Query: 358 GG 363
G
Sbjct: 667 SG 668
>At2g15980.1 68415.m01829 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 498
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 103 TFESLNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVANQIKD--QDHNGRADIEVVD 273
T+E L NG C DVD + V+ K KG E +T+ ++ D +G+ +E D
Sbjct: 353 TYEHLVNGYCKAGDVDSGLVVYREMKRKGFE-ADGLTIEALVEGLCDDRDGQRVVEAAD 410
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +1
Query: 325 GNKEAIADAEEGGDDQEFECVVTKEVSLSEISDKTGSIRITRLPAPLKKEQLNTDE 492
G+ E + DAE+GG+ +E S++E D +++ R P+ ++K++ DE
Sbjct: 1054 GDLEDLLDAEDGGEGEE------SNKSMNEKLDGVKGLKMRRWPSQVEKDEEIEDE 1103
>At5g14520.1 68418.m01702 pescadillo-related similar to pescadillo
[Zebrafish, Danio rerio] SWISS-PROT:P79741
Length = 590
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/71 (23%), Positives = 38/71 (53%)
Frame = +1
Query: 145 VDHQIFVFVGEKAKGVERMKAITVANQIKDQDHNGRADIEVVDSEAHDGIFDRFFDALGS 324
VD++ +V + A+ ++R++A N++ G+ D+E + + G+ R +A +
Sbjct: 434 VDNEAEGYVPDYAETIKRLQA-AARNEVLPLPGVGKEDLEDPQNLLYAGVMSRAEEAEAA 492
Query: 325 GNKEAIADAEE 357
NK+ +A E+
Sbjct: 493 KNKKKMAAQEK 503
>At3g03650.1 68416.m00368 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 499
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 220 NQIKDQDHNGRADIEVVDSEAHDGIFDRFFDALGSGNKEAIADAEEGGDDQEFECVVTKE 399
+++ + + RA I V +S D +F FF +L + ++ D+E + V K
Sbjct: 179 SELPEDSRSSRAAIRVKNSSEADVVFVPFFSSLSYNRFSKVNQKQKKSQDKELQENVVKY 238
Query: 400 VS 405
V+
Sbjct: 239 VT 240
>At1g35720.1 68414.m04440 annexin 1 (ANN1) identical to annexin
(AnnAt1) [Arabidopsis thaliana] GI:4959106
Length = 317
Score = 28.3 bits (60), Expect = 3.2
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +1
Query: 196 RMKAITVANQIKDQDHNGRADIEVVDSEAHDGI---FDRFFDALGSGNKEAIADAEEGGD 366
+ +A V +IKD+ +N I ++ + + I F+R+ D G +E + EEG D
Sbjct: 169 KQEAKLVHEKIKDKHYNDEDVIRILSTRSKAQINATFNRYQDDHG---EEILKSLEEGDD 225
Query: 367 DQEF 378
D +F
Sbjct: 226 DDKF 229
>At3g55540.1 68416.m06167 nuclear transport factor 2 (NTF2) family
protein contains similarity to Swiss-Prot:Q9P926 nuclear
transport factor 2 (NTF-2) [Candida albicans]
Length = 334
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 269 LTPKRTMESSTGSSMPSAPATRRPSLMPKKGATIKSLN 382
+TP+ T+ESS+ S+ + P M KKG + N
Sbjct: 288 VTPRDTLESSSQSAAKPSTDVELPYFMVKKGKLLSYFN 325
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +1
Query: 283 HDGIFDRFFDALGSGNKEAIADAEEGGDDQEFECVVTKEVSLSEISDKTGSIRITR 450
H+G+ D +G + A + D++ + + TKE L+ + D GS+ R
Sbjct: 11 HEGLQIFSIDVQPNGERFATGGGDHKSVDKDLQNIDTKERLLATLRDHFGSVNCVR 66
>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
protein-related similar to matrix-localized MAR DNA
binding protein MFP1 GI:1771158 from [Lycopersicon
esculentum]
Length = 726
Score = 27.1 bits (57), Expect = 7.5
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +1
Query: 82 RVKQVKPTFESLNNGDCFILDV---DHQIFVFVGEKAKGVERMKAITVANQIKDQDHNGR 252
+ K+ +PT SLN D + DV + F+ VG ++++ +A++ ++ +
Sbjct: 47 KFKRRRPTLASLNQEDGYEYDVASAKRRAFLLVGISVLPFLQLRSPALADERGNEIKTSK 106
Query: 253 ADIEVVDSEAHDGIFDRFFDALGSG 327
D+E + +G F AL +G
Sbjct: 107 VDLETEVAVVSEGTSPNPFLALLNG 131
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin
family
Length = 1919
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +1
Query: 322 SGNKEAIADAEEGGDDQEFECVVTKEVSLSEISDKTGSIRITRLPAPLKKEQLNTDE 492
+G+ E + DAEEGG+ +E +S ++ D +++ R P+ ++ ++ DE
Sbjct: 1221 AGDLENLLDAEEGGEGEE------SNISKNDKLDGVKGLKMRRRPSQVETDEEIEDE 1271
>At5g63740.1 68418.m08000 zinc finger protein-related
Length = 226
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 259 IEVVDSEAHDGIFDRFFDALGSGNKEAIADAEEGGDDQEFE 381
I+V D +DG D D G +++ ADA+E D+ E E
Sbjct: 49 IKVYDDHNNDGEGDGDGDGDGDEDEDEDADADEDEDEDEDE 89
>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
profile PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger C2H2 type
Length = 977
Score = 26.6 bits (56), Expect = 9.9
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = +1
Query: 172 GEKAKGVERMKAITVANQIKDQDHNGRADIEVVDSEAHDGIFDRFFDALGSGNKEAIADA 351
GEK K V T +Q+K Q+H A E+V+ F F+ + + + +I D+
Sbjct: 732 GEKTKKVSCKNQTTFDSQLKSQNHYTMAK-ELVEK-----AFVSAFEHVSALEQFSIVDS 785
Query: 352 EEGGDDQEFECVVTKEVSL 408
+D + E TKE +L
Sbjct: 786 RTIREDTDQEKEATKEQTL 804
>At5g04870.1 68418.m00510 calcium-dependent protein kinase isoform
AK1 (AK1) identical to calcium-dependent protein kinase,
isoform AK1 (CDPK) [Arabidopsis thaliana]
SWISS-PROT:Q06850; contains protein kinase domain,
Pfam:PF00069; contains EF hand domain (calcium-binding
EF-hand), Pfam:PF00036, INTERPRO:IPR002048
Length = 610
Score = 26.6 bits (56), Expect = 9.9
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +1
Query: 307 FDALGSGNKEAIADAEEGGDDQEFECVVTKEVSLSEISDKTGSIRITRLPAPLKKEQLNT 486
F A+ K A+ E ++E + KE+ +DK+G I L A LK+ N
Sbjct: 430 FSAMNKFKKMALRVIAESLSEEEIAGL--KEMFNMIDADKSGQITFEELKAGLKRVGANL 487
Query: 487 DECYVLD 507
E +LD
Sbjct: 488 KESEILD 494
>At4g24175.1 68417.m03469 expressed protein
Length = 306
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +1
Query: 160 FVFVGEKAKGVERMKAITVANQIKDQDHNGRADIEVVDSEAHDGIFDRFFDALGSGNKEA 339
F ++G+ + VE T+ N K DH + ++ + S A D + D D+ +
Sbjct: 149 FNYIGKLLREVEPDLMDTLINATKQGDH---STLQTLISSAKD-VADDVGDSYDDDTETE 204
Query: 340 IADAEEGGDD 369
D EEG D+
Sbjct: 205 SEDEEEGSDE 214
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 293 SSTGSSMPSAPATRRPSLMP 352
SS SS+PS+PA + PSL P
Sbjct: 42 SSVVSSIPSSPAPQSPSLNP 61
>At2g25660.1 68415.m03075 expressed protein
Length = 2146
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 310 DALGSGNKEAIADAEEGGDDQEFECVVTKEVSLSEISDKTGSIRITRL 453
DA G GN + +A+ + GDD E+ T+ V + + +R+ +
Sbjct: 1405 DASGGGNGDTLAEFDFHGDDWEWGTYKTQRVLATGSYNNDDGLRLKEM 1452
>At1g22430.1 68414.m02804 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 388
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 334 EAIADAEEGGDDQEFECV-VTKEVSLSEISDKTGS 435
E I + EGG D FECV + ++ + IS +TG+
Sbjct: 264 EVIKEMTEGGVDYSFECVGLASLLNEAFISTRTGT 298
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.134 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,976,722
Number of Sequences: 28952
Number of extensions: 192434
Number of successful extensions: 682
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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