Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31608
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   2.9  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   3.8  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   6.7  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    25   8.9  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   8.9  

>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 266 WYSQGHENEEMRQTRRLLEVME 331
           W  QGH      QTR++L+++E
Sbjct: 637 WKKQGHRTLLFSQTRQMLDILE 658


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
            Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 39   VALAAPNTIGDVPTALPAHPRGCVWILGKCSRNCE 143
            VAL A  T+G +   +P HP     + G  SR C+
Sbjct: 907  VALEAWETLGSIGLIIPVHP--STNVSGALSRQCQ 939


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 241 SQMGCVS*TGTGTSHVASGIFGRQPV 164
           SQ   +S   +G S  +SGIFGR P+
Sbjct: 303 SQGSNLSSQNSGLSSSSSGIFGRMPI 328


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 17  NVVCFNRGSSCRSQHH 64
           NV CF RG+  RS+ H
Sbjct: 213 NVQCFTRGAGIRSKKH 228


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 138 CEEGTHSYTTGCRPKMPEATCDVPVPV 218
           C +   S TTG RP +P     +P PV
Sbjct: 404 CIDRFVSMTTGRRPSIPLECISIPYPV 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,885,053
Number of Sequences: 5004
Number of extensions: 34087
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)