Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31608
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0522 + 3875958-3876473                                           32   0.31 
03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182...    30   0.96 
03_02_0671 + 10315260-10315370,10315984-10316027,10316141-103162...    30   0.96 
08_01_1058 + 10765837-10766325                                         28   5.1  
07_03_0889 - 22316945-22317062,22317149-22318794                       27   6.8  
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     27   8.9  
04_01_0360 - 4720997-4721812                                           27   8.9  
02_01_0088 - 627825-628984,629339-629509,629612-630416                 27   8.9  

>07_01_0522 + 3875958-3876473
          Length = 171

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -2

Query: 317 AVFEFDAFLRFRVPDCTRVAVARGEVADG 231
           AVFE D + RFR+P CT  A+A    ADG
Sbjct: 107 AVFELDRW-RFRLPPCTLPAMATATYADG 134


>03_05_0142 -
           21217375-21217518,21217851-21217899,21218191-21218258,
           21218368-21218413,21218548-21218641,21218775-21218837,
           21219018-21219171,21219414-21219476,21219568-21219681,
           21219779-21219844,21220813-21220870,21221859-21221932,
           21222045-21222110,21223139-21223187,21223483-21223550,
           21223660-21223705,21223908-21224001,21224117-21224179,
           21224290-21224412,21224503-21224536,21224906-21224968,
           21225825-21225911,21226293-21226370
          Length = 587

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 120 GKCSRNCEEGTHSYTTGCRPKMPEATCDVPVPVQETHPICDFSACYCDP-GTVRDTKTKK 296
           G   ++   G   YTT  RP  P AT   P+P +      DFS     P  T +D KT++
Sbjct: 308 GSAGQSSYSGGAFYTTQSRPSAPPATHLSPLPPEPADFYNDFSTPVDIPMDTSKDMKTRE 367


>03_02_0671 +
           10315260-10315370,10315984-10316027,10316141-10316204,
           10316278-10316392,10316504-10316571,10316917-10317014,
           10317543-10317657,10318425-10318641,10319541-10319667,
           10319803-10319857,10319997-10320093,10320748-10320876,
           10320964-10321097,10321660-10321746,10321998-10322069,
           10322320-10322359,10322535-10322779,10323587-10323764,
           10323931-10324136,10324681-10324977
          Length = 832

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -1

Query: 69  LRWCWERQE-LPRLKHTT 19
           +RWCWE  E LPR+K T+
Sbjct: 426 IRWCWEESERLPRMKSTS 443


>08_01_1058 + 10765837-10766325
          Length = 162

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +2

Query: 44  SCRSQHHRRCPDSLAR--ASSWLRLD 115
           S  SQHHRRC  S+ R  A SW  L+
Sbjct: 68  SSSSQHHRRCTASVGRPSAPSWPSLN 93


>07_03_0889 - 22316945-22317062,22317149-22318794
          Length = 587

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 272 CTRVAVARGEVADGVCLLNW 213
           C RV V+  +VADGVC+L W
Sbjct: 190 CVRVVVS--DVADGVCVLVW 207


>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 72  HLRWCWERQELPRLKHTTL 16
           H+R CW  Q LPRL    L
Sbjct: 851 HVRGCWSLQHLPRLSQEDL 869


>04_01_0360 - 4720997-4721812
          Length = 271

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 108 RSHEDARARLSGHLRWCWERQELPRLKH-TTLPSNA 4
           R  E  R    G+ +W +  ++ PRL H TT P +A
Sbjct: 206 RERESKRLGFEGYAQWAYFFEKAPRLPHITTNPLSA 241


>02_01_0088 - 627825-628984,629339-629509,629612-630416
          Length = 711

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
 Frame = +3

Query: 213 PVQETHPICDFSA----CYCDPGT-VRDTKTKKC 299
           P Q  H ICD +     CYC PGT   D K + C
Sbjct: 276 PGQYCHGICDNTIGGYHCYCGPGTQSTDPKREPC 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,727,161
Number of Sequences: 37544
Number of extensions: 250501
Number of successful extensions: 748
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)