Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31608
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11890.3 68417.m01892 protein kinase family protein contains ...    27   5.7  
At4g11890.2 68417.m01891 protein kinase family protein contains ...    27   5.7  
At4g11890.1 68417.m01890 protein kinase family protein contains ...    27   5.7  
At3g44100.1 68416.m04726 MD-2-related lipid recognition domain-c...    27   5.7  
At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase fa...    27   7.5  

>At4g11890.3 68417.m01892 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 354

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 116 DPNAATRMRGQGCRDISDGVGSGKSY 39
           DP+ A ++  + CR+I DG+  G  Y
Sbjct: 127 DPHRAAQLNWEMCRNIIDGIARGLRY 152


>At4g11890.2 68417.m01891 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 352

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 116 DPNAATRMRGQGCRDISDGVGSGKSY 39
           DP+ A ++  + CR+I DG+  G  Y
Sbjct: 125 DPHRAAQLNWEMCRNIIDGIARGLRY 150


>At4g11890.1 68417.m01890 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 351

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 116 DPNAATRMRGQGCRDISDGVGSGKSY 39
           DP+ A ++  + CR+I DG+  G  Y
Sbjct: 124 DPHRAAQLNWEMCRNIIDGIARGLRY 149


>At3g44100.1 68416.m04726 MD-2-related lipid recognition
           domain-containing protein / ML domain-containing protein
           contains Pfam profile PF02221: ML domain
          Length = 152

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 204 VPVPVQ-ETHPICDFSACYCDPGT 272
           V +PV  ETH +CD +AC   PG+
Sbjct: 79  VGIPVHTETHDLCDETACPVAPGS 102


>At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase
           family protein
          Length = 609

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 126 CSRNCEEGTHSYT---TGCRPKMPEATCDVPVPV 218
           C+R  E+G   Y+   T CR K   ++C+  +PV
Sbjct: 61  CTRTSEKGRTGYSGVATFCRVKSASSSCETALPV 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,039,852
Number of Sequences: 28952
Number of extensions: 188897
Number of successful extensions: 520
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)