Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31605
         (387 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)                      27   7.1  
SB_174| Best HMM Match : Homeobox (HMM E-Value=1.9e-19)                26   9.3  

>SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)
          Length = 1710

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 105  TVNNYVMCPIVCLSAKRLKFYLSGCLRC 188
            TV +++  P VC  ++   F LSGC+ C
Sbjct: 1608 TVISFLWRPDVCAISEHKAFILSGCIFC 1635


>SB_174| Best HMM Match : Homeobox (HMM E-Value=1.9e-19)
          Length = 149

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 238 VLSYQSFCVFQRASLNVYHVTTKLN*REHVKKKKKTRGGARYP 366
           V+S Q  C+   A+L+ YH  T L  R+  +   KTR   RYP
Sbjct: 89  VMSLQLLCLLT-ATLSRYHTWTVLRPRQSSRHTPKTR--HRYP 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,014,592
Number of Sequences: 59808
Number of extensions: 193813
Number of successful extensions: 268
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)