Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31604
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    27   1.7  
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces...    25   5.1  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   8.9  

>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 209 CFNNSRPYQLSYNLNTLADLWLGWM 135
           CF+   P Q   NL + A+LW  WM
Sbjct: 372 CFDGYLPAQERSNLKSKAELWNEWM 396


>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -2

Query: 323 F*LKKKTNKIPVFLTLIKVYFTYCETRHINDRQCYGLRCFNNSRPYQLSYNL 168
           F LK +  ++ V  +  KV  T              L+CF+  +PYQ S  L
Sbjct: 158 FYLKNRLAELKVLRSSTKVVLTSSLVAEKKSLDFEDLQCFHGEQPYQSSKRL 209


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -2

Query: 287 FLTLIKVYFTYCETRHINDR-QCYGLRCFNNS 195
           FLT    Y   C +R    + QCY  RC  NS
Sbjct: 397 FLTNGGCYSYICRSRSCPSKYQCYSCRCARNS 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,465
Number of Sequences: 5004
Number of extensions: 30705
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)