Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31602
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    29   0.41 
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   1.7  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   6.7  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.9  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   8.9  

>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +3

Query: 138 DLHLYSFVFIFHIHMINLK-FGLMLYSSVEYILQLHLKALAVVNVLYLLII 287
           D++   ++ IF + +I +  FG+ ++  VE++L L +K +A V  + L II
Sbjct: 186 DVNCAVWISIFLVVVIGINLFGVRVFGEVEFVLAL-IKVVATVGFIILAII 235


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 12  PYCMDSCMNSDHYCPNCNAYIGT 80
           PY +++C N   Y  NCN+ + T
Sbjct: 203 PYLVNTCFNGTQYPVNCNSALRT 225


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 156 FVFIFHIHMINLKFGLMLYSSVEYILQLHLKALAVVNVL 272
           +V+ FH+  + L+      S++EY   L LK L    VL
Sbjct: 170 YVYSFHLEYVPLESNTFSASALEYSKNLDLKNLDESEVL 208


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 116 RNTFT-IMKLSCIGSNVGVAVWTVMVRIHA 30
           RNT++ + K + +GS++G+A W +  R  A
Sbjct: 14  RNTYSALFKGALVGSSLGIAGWLIGNRYSA 43


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 217 LWSIFCSFILKHWR 258
           L SI  SF++KHWR
Sbjct: 469 LLSIISSFLVKHWR 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,148
Number of Sequences: 5004
Number of extensions: 40377
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)