Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31602
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681...    29   2.2  
09_04_0244 - 15984862-15984978,15985054-15985119,15985701-159857...    28   3.9  
02_05_1341 - 35801987-35802472                                         27   6.8  
04_04_0576 + 26346611-26346637,26346758-26346883,26347161-263472...    27   8.9  

>12_02_1270 +
           27466516-27466621,27466722-27466885,27467385-27468173,
           27468263-27468479,27469078-27469256,27470233-27470474,
           27470607-27470994
          Length = 694

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 235 CKIYSTELYNIKPNLRLIM*I*NIKTKLYKCKSSNGIQEY 116
           C  YS EL+N  PN+R I  + N  T     +S +  Q+Y
Sbjct: 92  CNPYSAELFNAGPNIRTIPFLCN-STSSSSAQSKDSTQDY 130


>09_04_0244 -
           15984862-15984978,15985054-15985119,15985701-15985793,
           15987284-15987410,15988710-15988840,15989485-15989766,
           15989852-15989985,15990083-15990292,15990456-15990486
          Length = 396

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 61  ATPTLEPIQDNFIIVNVLRIPVCHSMICTYIVS 159
           A  T+EP Q +  +V +  +PVC+SM+C  +++
Sbjct: 150 AVVTIEP-QFDLPLVKLHDVPVCYSMLCRPVIA 181


>02_05_1341 - 35801987-35802472
          Length = 161

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 18  CMDSCMNSDHYCPNCNAYIGTYT 86
           C+D+ + +   CP+C A +GT T
Sbjct: 103 CIDTWLGTHATCPSCRATVGTST 125


>04_04_0576 +
           26346611-26346637,26346758-26346883,26347161-26347295,
           26348162-26348332
          Length = 152

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 76  EPIQDNFIIVNVLRIPVCHSMICTYIVSFLY 168
           E I DNF ++   R+  CH   C   VSF Y
Sbjct: 50  EKISDNFQLIWAFRLKPCHCRKCV-CVSFYY 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,230,625
Number of Sequences: 37544
Number of extensions: 221765
Number of successful extensions: 473
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)