Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31602
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               29   2.3  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_27852| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)                    27   6.9  
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 67  PTLEPIQDN-FIIVNVLRIPVCHSMICTYIVSFLYF 171
           PT+EP QDN FI V    +P  +  ICT+I    YF
Sbjct: 107 PTIEPYQDNVFINVICRNLPQWNDRICTHIKLIKYF 142


>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 15  YCMDSCMNSDHYCPNCNAYIGTYTR*FH 98
           YC  +C ++ +YCP C  +I T+ +  H
Sbjct: 425 YCCQTCASNLYYCPLCKTFI-TFVQRIH 451


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 24   DSCMNSDHYCPNCNAYIGTYTR*FHNCERI--AYSCMP 131
            D+C    HYCPN +A I      +HN  RI     CMP
Sbjct: 2441 DACPPG-HYCPNGSAPISCPAGFYHNAGRIWNRTQCMP 2477


>SB_27852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 480

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 153 YISANHRMAYRNTQYVHNYEIILYRFQ-CRRCSLDSNGPNSCTSP 22
           YI  N+ M   N  +  N  +I Y    C++C LDS+  N  +SP
Sbjct: 247 YIRNNYAMG--NQHFGLNKAVIAYVVDSCQKCGLDSHTSNENSSP 289


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = -1

Query: 174  YEI*KRNYISANHRMAYRNTQY---VHNYEIILYRF 76
            Y    RNY  ANH   Y N  Y   +HNY   ++ +
Sbjct: 3128 YPYANRNYPYANHNYPYANHNYPYAIHNYLYAIHNY 3163


>SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)
          Length = 900

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 165 IFHIHMINLKFGLMLYSSVEYILQLHLKALAV 260
           +F+   INLK+G   Y+   Y L  + KA+AV
Sbjct: 556 VFYTKAINLKYGHFRYARAYYELGYYEKAVAV 587


>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2484

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/41 (29%), Positives = 28/41 (68%)
 Frame = +3

Query: 159  VFIFHIHMINLKFGLMLYSSVEYILQLHLKALAVVNVLYLL 281
            V + ++  +NL +  +L+ ++ Y+LQ++L  +  VN++Y+L
Sbjct: 1846 VTLSYVLQVNLSY--VLHLNLSYVLQVNLIYVLQVNLIYVL 1884


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,644,299
Number of Sequences: 59808
Number of extensions: 277672
Number of successful extensions: 627
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)