Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31601
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52499| Best HMM Match : COX5A (HMM E-Value=0)                      149   1e-36
SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054)               28   4.0  
SB_56875| Best HMM Match : LON (HMM E-Value=0)                         28   5.3  
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)                   28   5.3  
SB_41990| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)         28   5.3  
SB_56923| Best HMM Match : PT (HMM E-Value=0.95)                       28   5.3  
SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_54233| Best HMM Match : zf-nanos (HMM E-Value=6)                    27   9.2  
SB_50786| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_48517| Best HMM Match : DUF866 (HMM E-Value=1.9)                    27   9.2  
SB_47843| Best HMM Match : zf-nanos (HMM E-Value=6.5)                  27   9.2  
SB_45397| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_44175| Best HMM Match : zf-nanos (HMM E-Value=1.5)                  27   9.2  
SB_33627| Best HMM Match : SMC_hinge (HMM E-Value=0.75)                27   9.2  
SB_25363| Best HMM Match : DUF866 (HMM E-Value=3.6)                    27   9.2  
SB_20237| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_18151| Best HMM Match : zf-nanos (HMM E-Value=6.5)                  27   9.2  
SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_52499| Best HMM Match : COX5A (HMM E-Value=0)
          Length = 208

 Score =  149 bits (361), Expect = 1e-36
 Identities = 70/107 (65%), Positives = 83/107 (77%), Gaps = 1/107 (0%)
 Frame = +2

Query: 140 PVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYAL 319
           PVES+E FD R+EAYF+R DID WE+R+G+N+L G DLVP+PKII A  HACRR+NDY  
Sbjct: 104 PVESEEAFDARWEAYFSRPDIDAWELRRGLNELYGHDLVPEPKIINAMFHACRRLNDYGT 163

Query: 320 AVRFIEACKDK-CGNKVNEIYPYIIQEIKPTLTELGIDTPEELGYDK 457
            VR +EA KDK  GNK  EIYPYI+Q+ KP + ELGI TPEELG  K
Sbjct: 164 TVRILEAVKDKAAGNK--EIYPYILQQCKPVMEELGILTPEELGLAK 208


>SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 129 HTEVQWKVTKNSITDMKHISTEKTLMVGKSAKE 227
           HT  +   TKNS T +KH+    T  +G SAKE
Sbjct: 176 HTGARKAFTKNSRTLLKHVKEIATKSMGDSAKE 208


>SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054)
          Length = 425

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 457 LIVAKLLRCVNTQFGESRLDLLNDVWVDFIHFVSTFVFAGFYKPD 323
           L++  +L  +N+   +SRL + +D  V F  F  TF F   Y PD
Sbjct: 364 LVLVVILVALNSGLIKSRLVVHDDAVVWFAKFSQTFSFVCGYMPD 408


>SB_56875| Best HMM Match : LON (HMM E-Value=0)
          Length = 925

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 208 LGNPQRNE*PLWYGSRSRPKDYQSCPSCMQTS 303
           +GN + N  P W   RS+ KD QS P    T+
Sbjct: 846 IGNVKSNPKPFWQFIRSQRKDSQSMPPLKATN 877


>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
          Length = 1104

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 385 VWVDFIHFVSTFVFAGFYKPDCKGIIIDSSACMKGSFDNL 266
           +W D  HF S      + +  C G I D+S C+K    +L
Sbjct: 445 LWKDKSHFKSALASLLYNRASCLGRIGDASGCVKDCTSSL 484


>SB_41990| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)
          Length = 455

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 208 LGNPQRNE*PLWYGSRSRPKDYQSCPSCMQTS 303
           +GN + N  P W   RS+ KD QS P    T+
Sbjct: 376 IGNVKSNPKPFWQFIRSQRKDSQSMPPLKATN 407


>SB_56923| Best HMM Match : PT (HMM E-Value=0.95)
          Length = 441

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 416 ELGIDTPEELGYDKPELALES 478
           ELG+D  EEL  D PEL L S
Sbjct: 242 ELGVDLQEELNRDAPELMLLS 262


>SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 266 LGRERDPYHRGHSFLCG 216
           +GRE  PY + HS++CG
Sbjct: 248 IGREIQPYSKPHSYVCG 264


>SB_54233| Best HMM Match : zf-nanos (HMM E-Value=6)
          Length = 194

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 153 TKNSITDMKHISTEKTLMVGKSAKE 227
           TKNS T +KH+    T  +G SAKE
Sbjct: 86  TKNSRTLLKHVKEIATKSMGDSAKE 110


>SB_50786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 153 TKNSITDMKHISTEKTLMVGKSAKE 227
           TKNS T +KH+    T  +G SAKE
Sbjct: 173 TKNSRTLLKHVKEIATKSMGDSAKE 197


>SB_48517| Best HMM Match : DUF866 (HMM E-Value=1.9)
          Length = 434

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 153 TKNSITDMKHISTEKTLMVGKSAKE 227
           TKNS T +KH+    T  +G SAKE
Sbjct: 30  TKNSRTLLKHVKEIATKSMGDSAKE 54


>SB_47843| Best HMM Match : zf-nanos (HMM E-Value=6.5)
          Length = 251

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 153 TKNSITDMKHISTEKTLMVGKSAKE 227
           TKNS T +KH+    T  +G SAKE
Sbjct: 157 TKNSRTLLKHVKEIATKSMGDSAKE 181


>SB_45397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 153 TKNSITDMKHISTEKTLMVGKSAKE 227
           TKNS T +KH+    T  +G SAKE
Sbjct: 11  TKNSRTLLKHVKEIATKSMGDSAKE 35


>SB_44175| Best HMM Match : zf-nanos (HMM E-Value=1.5)
          Length = 305

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 153 TKNSITDMKHISTEKTLMVGKSAKE 227
           TKNS T +KH+    T  +G SAKE
Sbjct: 198 TKNSRTLLKHVKEIATKSMGDSAKE 222


>SB_33627| Best HMM Match : SMC_hinge (HMM E-Value=0.75)
          Length = 452

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 153 TKNSITDMKHISTEKTLMVGKSAKE 227
           TKNS T +KH+    T  +G SAKE
Sbjct: 415 TKNSRTLLKHVKEIATKSMGDSAKE 439


>SB_25363| Best HMM Match : DUF866 (HMM E-Value=3.6)
          Length = 463

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 153 TKNSITDMKHISTEKTLMVGKSAKE 227
           TKNS T +KH+    T  +G SAKE
Sbjct: 198 TKNSRTLLKHVKEIATKSMGDSAKE 222


>SB_20237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 153 TKNSITDMKHISTEKTLMVGKSAKE 227
           TKNS T +KH+    T  +G SAKE
Sbjct: 99  TKNSRTLLKHVKEIATKSMGDSAKE 123


>SB_18151| Best HMM Match : zf-nanos (HMM E-Value=6.5)
          Length = 271

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 153 TKNSITDMKHISTEKTLMVGKSAKE 227
           TKNS T +KH+    T  +G SAKE
Sbjct: 198 TKNSRTLLKHVKEIATKSMGDSAKE 222


>SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 153 TKNSITDMKHISTEKTLMVGKSAKE 227
           TKNS T +KH+    T  +G SAKE
Sbjct: 392 TKNSRTLLKHVKEIATKSMGDSAKE 416


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,965,163
Number of Sequences: 59808
Number of extensions: 321174
Number of successful extensions: 710
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)