Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31599
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458     29   2.2  
11_02_0047 + 7716315-7716420,7716518-7716647,7716785-7716856,771...    27   6.8  
09_04_0285 + 16390786-16391291,16391370-16391957,16392034-163921...    27   8.9  

>11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458
          Length = 619

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -3

Query: 217 SLPIVSVPRKPCLPTPR*KNTSENQTL*TIIASPKSSXCFLFCFXIWLVPLNYCSLNLTH 38
           S+ +   P    LP+PR  + +E+  L  +   P+ S   L    +W +  + C++NL +
Sbjct: 445 SMDLEGHPLSRDLPSPRVSDRAESYWLACLEELPRCSRVIL----VWHIATSLCAINLAN 500

Query: 37  QNRI 26
             RI
Sbjct: 501 DRRI 504


>11_02_0047 +
           7716315-7716420,7716518-7716647,7716785-7716856,
           7717007-7717078,7717274-7717345,7717684-7717845,
           7718105-7718176,7718435-7718503,7718788-7718859,
           7718992-7719129,7719386-7719888,7720007-7720171,
           7720267-7720403,7720488-7720707,7720793-7721028,
           7721165-7721632
          Length = 897

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 168 LGVGRQGFRGTDTIGSDISNTL 233
           LG+    F GT TIGSD S+TL
Sbjct: 276 LGLKGNNFNGTLTIGSDYSSTL 297


>09_04_0285 +
           16390786-16391291,16391370-16391957,16392034-16392160,
           16392291-16392477,16392585-16392741,16392847-16393201
          Length = 639

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 116 RRCNNCLQCLIFRCIFLSRSRQAGFSWH 199
           R     +  LI  C++L   R +GFSW+
Sbjct: 3   RHAGTIILLLILACLWLCPGRSSGFSWN 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,680,628
Number of Sequences: 37544
Number of extensions: 179987
Number of successful extensions: 270
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)