Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31599
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11465| Best HMM Match : EGF (HMM E-Value=0.13)                      31   0.43 
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  

>SB_11465| Best HMM Match : EGF (HMM E-Value=0.13)
          Length = 695

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 213 CLSYPCHENPACRLRDKK 160
           C+S PCHE   CRL D+K
Sbjct: 163 CVSNPCHEGATCRLLDEK 180


>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 265 AYFHYKSAPERKVFEISLPIVSVPR--KPCLPTP 170
           AYF  ++A E+K    S+P+  VP    P  PTP
Sbjct: 375 AYFRQQAAKEQKAASTSMPVKKVPAPVSPAQPTP 408


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,036,899
Number of Sequences: 59808
Number of extensions: 233353
Number of successful extensions: 412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)