Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31599
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   5.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   10.0 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   10.0 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   10.0 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   10.0 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   10.0 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   10.0 

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 125 NNCLQCLIFRCIFLSRSRQA 184
           N C  C + +CI +  SR A
Sbjct: 118 NRCQYCRLKKCIAVGMSRDA 137


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 81  IXKQKRKXKLDLGDAIIVYNV 143
           I +QK   K+D G +I  YNV
Sbjct: 53  IPEQKNATKIDFGLSIQHYNV 73


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 49  SKSNS*VELTKSXNKKEN 102
           SK+N+ V+++K  NK+ N
Sbjct: 510 SKNNTIVDISKLVNKRNN 527


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 103 CFLFCFXIWLVPLNYCSLNLTHQNRIYR 20
           CF++   +  V +NY        N +YR
Sbjct: 372 CFIYASLLEFVCVNYVGRKRPMHNVVYR 399


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 103 CFLFCFXIWLVPLNYCSLNLTHQNRIYR 20
           CF++   +  V +NY        N +YR
Sbjct: 341 CFIYASLLEFVCVNYVGRKRPMHNVVYR 368


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 103 CFLFCFXIWLVPLNYCSLNLTHQNRIYR 20
           CF++   +  V +NY        N +YR
Sbjct: 392 CFIYASLLEFVCVNYVGRKRPMHNVVYR 419


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 103 CFLFCFXIWLVPLNYCSLNLTHQNRIYR 20
           CF++   +  V +NY        N +YR
Sbjct: 341 CFIYASLLEFVCVNYVGRKRPMHNVVYR 368


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 116 RRCNNCLQCLIFRCIFLSRSRQA 184
           R+ N C  C   +C+ +   R+A
Sbjct: 157 RQRNRCQYCRYQKCLAMGMKREA 179


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 116 RRCNNCLQCLIFRCIFLSRSRQA 184
           R+ N C  C   +C+ +   R+A
Sbjct: 157 RQRNRCQYCRYQKCLAMGMKREA 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,756
Number of Sequences: 438
Number of extensions: 2445
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)