Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31596
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    28   0.63 
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    25   4.5  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.8  

>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 28.3 bits (60), Expect = 0.63
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 160 LDPNAWWGPE--XHEIPQ*YQHTTLLRSV 240
           LDPN+WW P    + +P+  QH  ++RS+
Sbjct: 319 LDPNSWWYPNGLSNSMPEEIQH-NIIRSI 346


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 304 PLXGIGXEYGXNSNILGWLASILGRRVXL*XKGNILEQIPPI 429
           P  G G  YG  S+++    S+ G    +  K     QIPP+
Sbjct: 172 PRPGNGMVYGIGSHLIDQAVSLFGTPYSVTAKLEAQRQIPPL 213


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 355 WLASILGRRVXL*XKGNILEQIPPICDQHTGIG 453
           W  SI      +  KG+IL+  PP   Q  G+G
Sbjct: 46  WTCSICEATNHIDEKGDILDYRPPTPTQDKGVG 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,817
Number of Sequences: 5004
Number of extensions: 29142
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)