Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31596
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0566 + 4466318-4466695,4466736-4466909,4466941-4467038,446...    28   4.4  
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228...    27   5.8  
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340...    27   5.8  
03_04_0228 - 18989688-18989807,18990300-18990345,18990452-189905...    27   7.7  
02_05_1297 - 35536193-35536312,35536405-35536467,35536610-355369...    27   7.7  

>11_01_0566 +
           4466318-4466695,4466736-4466909,4466941-4467038,
           4467211-4467346
          Length = 261

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +2

Query: 128 WRLKIQNQHTSWILTLGGDRKXTKYHNDTSIRP 226
           W   I +QH  W L + G +  + +H    + P
Sbjct: 186 WATGIHDQHMGWNLVIAGSKSLSCHHGHHQLNP 218


>07_03_1345 +
           25919379-25920866,25921342-25921962,25922733-25922893,
           25923284-25923422,25923509-25923592,25923944-25923982,
           25924037-25924222,25924347-25924478,25924810-25925009,
           25925294-25925498,25925618-25925944
          Length = 1193

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 40  INEFDDRSWKPXMGGLFRLXVASCLTIELXASQNTEPA 153
           ++ FD+RSW P    LF+L    C      +S+N EP+
Sbjct: 867 LSAFDNRSWIPVTNILFQL----CKGFGFASSKNVEPS 900


>03_01_0438 +
           3399203-3399297,3399389-3399480,3399638-3399750,
           3400345-3400610,3400793-3400864,3401023-3401098,
           3401241-3401339,3401432-3401586,3401679-3401783,
           3401880-3401966,3402459-3402543,3402626-3402734,
           3403468-3403544,3403635-3403715,3404137-3404328,
           3404415-3404528,3404650-3404742,3404864-3404990,
           3405075-3405151,3405455-3405502,3405588-3405657,
           3405737-3405810,3405895-3406005,3406222-3406300,
           3406936-3408320
          Length = 1293

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = -1

Query: 455 CPIPVCWSHIGGICSRIFPFX*RXTLLPNIEASHPKILELXPY 327
           C +P+C S+  GI +RI P     T L + EA HPK + + PY
Sbjct: 861 CEVPLCSSYENGI-TRI-P---EETRLRDPEAYHPKAVCIGPY 898


>03_04_0228 -
           18989688-18989807,18990300-18990345,18990452-18990552,
           18990624-18990702,18990788-18990868,18991440-18991502,
           18994171-18994246,18994980-18995246,18995994-18996076,
           18996792-18996922,18997043-18997174
          Length = 392

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -3

Query: 234 SQKGRMLVSLWYFVXFRSPPSVRIQLVCWFCILRRXKFYC*TRRY 100
           S +GR  VS+ +F    S  S +I +V   C+LR  KF C   RY
Sbjct: 210 SVEGR--VSMEFFDLSESAQSKKIGVVRPCCLLRSLKFVCRELRY 252


>02_05_1297 -
           35536193-35536312,35536405-35536467,35536610-35536942,
           35537098-35537184,35538337-35538399,35538604-35538750,
           35538900-35539001,35539069-35539197,35539506-35539664,
           35539726-35539967,35540317-35540506,35540692-35540907,
           35541536-35541760
          Length = 691

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 205 VVFRAFPVPTKR*DPTCMLVLYFETPXVLLLDK 107
           V+ RAFP+P  +        + F+ P ++LLD+
Sbjct: 594 VLIRAFPIPGGQKSRVAFAKITFKKPHIILLDE 626


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,698,826
Number of Sequences: 37544
Number of extensions: 190990
Number of successful extensions: 346
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)