Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31596
         (473 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.7  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -3

Query: 303 WHGFAMIIKSISEVRYHXCHGXRSQKGRMLVSLWYFV 193
           WH    I K+I  +R+   H  R +    +   W +V
Sbjct: 473 WHHCPEIYKAIEGIRFIADHTKREEDSTRVKEDWKYV 509


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 72  WFPTAIVEFVYF*ILLDL 19
           WFP  ++ + Y  ILL++
Sbjct: 214 WFPLVVIIYTYTSILLEI 231


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 304 PLXGIGXEYGXNSNILGWLASI 369
           P+  +  EY   S++LGWL  +
Sbjct: 516 PVKYLTYEYPWWSHVLGWLCGL 537


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 304 PLXGIGXEYGXNSNILGWLASI 369
           P+  +  EY   S++LGWL  +
Sbjct: 569 PVKYLTYEYPWWSHVLGWLCGL 590


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 472 YLITMYVQSLYVGHILGVFVQEYFPF 395
           Y ++ +  ++ VG I+GVF+  + PF
Sbjct: 263 YHVSDHKAAITVGVIMGVFLICWVPF 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,960
Number of Sequences: 438
Number of extensions: 2462
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)