Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31593
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    28   0.72 
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    27   2.2  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   3.8  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   5.1  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   5.1  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   8.9  

>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 366 TFLSNIFYSIIPTAIPFNYLILMKYESRVFLKE 464
           +FLSNI  S++   +  N LIL+  +S +FL E
Sbjct: 424 SFLSNIGASLLSFTVDKNKLILVSNDSEIFLIE 456


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 73  DCFESIGQLPRNPEMESRCLERIKVRLMI 159
           DC       P++PE +S+C+ R++  +M+
Sbjct: 5   DCKRLQKLAPKSPENQSKCISRLRYMVML 33


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 79  FESIGQLPRNPEMESRCLERIKVRLMILK 165
           F S GQ    PE E + LE+  ++LM+LK
Sbjct: 116 FLSEGQNDITPEEERKGLEKFGMKLMVLK 144


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 200  YERVVCWFFSYSFKIINLTLILSKQRDSIS 111
            Y+ V+C+FFS+   I N+T      RD+++
Sbjct: 1161 YQSVICFFFSF-LVINNVTTAAQNGRDTMA 1189


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = -2

Query: 302 SILVVLSDFLSW*FPERL-SLQKTMIYSDLVNL*SYERVVCWFFSYSFKIINLTLILSKQ 126
           +IL+  +D +   FP+ + +  K + Y D      Y   +    +Y    INLT IL  Q
Sbjct: 596 NILIYEADDVKINFPQLIIAYLKHLEYVDAAVYLDYIACIPLVPAYQACSINLTKILLLQ 655

Query: 125 RDSISGFLGS*PMDSKQS 72
               S FLG    D++++
Sbjct: 656 SHEFSKFLGDIKPDTERT 673


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 121 IPSRDFLAADQWIRSSHSFQCLPLDSIYTVTNFAKEAC 8
           IP+R FL +            LPL  I   +NFA + C
Sbjct: 16  IPARSFLNSRGTYLVLRKSNILPLQHILRFSNFASKQC 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,113
Number of Sequences: 5004
Number of extensions: 40751
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)