BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV31593 (516 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 28 0.72 SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 27 2.2 SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 26 3.8 SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 25 5.1 SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 25 5.1 SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 8.9 >SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pombe|chr 2|||Manual Length = 710 Score = 28.3 bits (60), Expect = 0.72 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = +3 Query: 366 TFLSNIFYSIIPTAIPFNYLILMKYESRVFLKE 464 +FLSNI S++ + N LIL+ +S +FL E Sbjct: 424 SFLSNIGASLLSFTVDKNKLILVSNDSEIFLIE 456 >SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces pombe|chr 1|||Manual Length = 299 Score = 26.6 bits (56), Expect = 2.2 Identities = 9/29 (31%), Positives = 18/29 (62%) Frame = +1 Query: 73 DCFESIGQLPRNPEMESRCLERIKVRLMI 159 DC P++PE +S+C+ R++ +M+ Sbjct: 5 DCKRLQKLAPKSPENQSKCISRLRYMVML 33 >SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor Grt1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 648 Score = 25.8 bits (54), Expect = 3.8 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 79 FESIGQLPRNPEMESRCLERIKVRLMILK 165 F S GQ PE E + LE+ ++LM+LK Sbjct: 116 FLSEGQNDITPEEERKGLEKFGMKLMVLK 144 >SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1402 Score = 25.4 bits (53), Expect = 5.1 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -2 Query: 200 YERVVCWFFSYSFKIINLTLILSKQRDSIS 111 Y+ V+C+FFS+ I N+T RD+++ Sbjct: 1161 YQSVICFFFSF-LVINNVTTAAQNGRDTMA 1189 >SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pombe|chr 3|||Manual Length = 933 Score = 25.4 bits (53), Expect = 5.1 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = -2 Query: 302 SILVVLSDFLSW*FPERL-SLQKTMIYSDLVNL*SYERVVCWFFSYSFKIINLTLILSKQ 126 +IL+ +D + FP+ + + K + Y D Y + +Y INLT IL Q Sbjct: 596 NILIYEADDVKINFPQLIIAYLKHLEYVDAAVYLDYIACIPLVPAYQACSINLTKILLLQ 655 Query: 125 RDSISGFLGS*PMDSKQS 72 S FLG D++++ Sbjct: 656 SHEFSKFLGDIKPDTERT 673 >SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|Schizosaccharomyces pombe|chr 1|||Manual Length = 693 Score = 24.6 bits (51), Expect = 8.9 Identities = 13/38 (34%), Positives = 17/38 (44%) Frame = -3 Query: 121 IPSRDFLAADQWIRSSHSFQCLPLDSIYTVTNFAKEAC 8 IP+R FL + LPL I +NFA + C Sbjct: 16 IPARSFLNSRGTYLVLRKSNILPLQHILRFSNFASKQC 53 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,093,113 Number of Sequences: 5004 Number of extensions: 40751 Number of successful extensions: 101 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 101 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 208287218 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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