Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31593
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   1.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   10.0 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   10.0 

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 100 PRNPEMESRC-LERIKVRLMI 159
           PR+PE  SRC ++R K+++ +
Sbjct: 323 PRSPESNSRCSVKREKIKISV 343


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 363 LTFLSNIFYSIIPTAIPFNYLIL 431
           LT++S +FY +  T  P  Y I+
Sbjct: 329 LTYMSGVFYYLSTTVNPLLYNIM 351


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 338 NVKNVFSATYVLVKYIL 388
           N+KN+F   +V++  +L
Sbjct: 3   NMKNIFPVLFVIINVLL 19


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 111 RDGISLLGKNQSEINDFKAVTKKPTN 188
           +D + +L     E+N  K++T+ P N
Sbjct: 292 KDSLIVLTSALQEMNKSKSITEPPKN 317


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 276 PFLVIPRTIIASENN 232
           PFL+  +T I+ ENN
Sbjct: 860 PFLIPEQTSISHENN 874


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 307 IVVDFFFIANE 339
           ++VDFF I NE
Sbjct: 263 LIVDFFMILNE 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,714
Number of Sequences: 438
Number of extensions: 2674
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)