Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31593
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica...    30   0.80 
At5g28290.1 68418.m03434 protein kinase, putative similar to LST...    27   5.7  
At1g27020.1 68414.m03294 expressed protein                             27   9.9  

>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
           domain-containing protein / F-box family protein similar
           to SP|P36607 DNA repair protein rad8
           {Schizosaccharomyces pombe}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain, PF00646: F-box domain
          Length = 1378

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = -1

Query: 114 LGISWQLTNGFE-AVTLFSASRWILS-TPSPTS 22
           LG S  LTN F+ AV+L + +RW+L+ TP+P +
Sbjct: 839 LGSSVSLTNKFQMAVSLTACNRWLLTGTPTPNT 871


>At5g28290.1 68418.m03434 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 568

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 89  MDSKQSLFSVPPVGFYLHRHQ 27
           +D + S+ SV PV  YLHRH+
Sbjct: 308 VDQEDSVSSVKPVHTYLHRHR 328


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 366 TFLSNIFYSIIPTAIPFNYLILMKYE-SRVFLKEKKGHTHLFFTPF 500
           TFL N+F SI+ T +  N +    +E  +    EK  + H FF  F
Sbjct: 18  TFLQNVFESILKTYLRKNPMAKTIWELVKSVDNEKISYDHFFFRTF 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,563,244
Number of Sequences: 28952
Number of extensions: 197775
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)