Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31590
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    29   0.55 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   2.9  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   3.8  
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces...    25   5.1  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   6.7  
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch...    25   6.7  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   8.9  

>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 289  DQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKYTMWVKYKKT 450
            +++  I S+L + +   Y   + + +AD A+    QP GD L    +W ++  T
Sbjct: 857  EEVLSIVSMLGEASSLFYRPKDKIMEADKARANFTQPGGDHLTLLHIWNEWVDT 910


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 443  LYLTHIVYLFSLSPTGCT 390
            +Y  H+VY+ SLSP  C+
Sbjct: 1399 VYAAHLVYILSLSPDVCS 1416


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 159 RYGQDLPVHVSGLPTLRYFYKDRAGHNGNRDEQGDVPASQFDARSAPR 302
           +Y  D+P +VS LP  R  Y     + G  DE+     +  D  S+P+
Sbjct: 796 QYHVDMPDNVSDLPQTRLCYGACVYNVGLLDEEKRKDLANSDLNSSPK 843


>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 114

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 259 ETCLQVNSTQDQLQDIQSVLPDMTDFKYIG-TETMQDADTAK 381
           ET LQ N+T   L +++ V PD   +K IG T   Q  + AK
Sbjct: 26  ETQLQENTTV--LNELEKVAPDSNIYKQIGPTLVKQSHEEAK 65


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 286 QDQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGDKLNK 420
           QD+L+D+ +  P   + K  GT+   D   ++W     V D L +
Sbjct: 479 QDKLRDLAAKHPYFEEVKRYGTDANGDPLWSEWFYNPDVDDDLER 523


>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
           Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 40  QWSPVYTVKGLL 75
           QWSPVYT+K  L
Sbjct: 96  QWSPVYTMKSAL 107


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 70  LLNIPYAELHEPFYAWYDSKNSKSRIDY 153
           L + P +ELH     W+ SK S   + Y
Sbjct: 704 LSSSPLSELHPQLREWFSSKQSVYSLQY 731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,155
Number of Sequences: 5004
Number of extensions: 48336
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)