Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31589
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 262 2e-71
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 145 2e-36
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 126 2e-30
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 100 1e-22
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 84 7e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 81 5e-17
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 73 2e-14
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.072
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 28 0.67
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 0.88
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 27 0.88
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 4.7
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 4.7
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.2
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 24 8.2
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 24 8.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 8.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 262 bits (641), Expect = 2e-71
Identities = 114/132 (86%), Positives = 124/132 (93%)
Frame = +2
Query: 20 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 199
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 200 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVXPEEHPVLXTEAPLNPKANREKMTX 379
RGILTLKYPIEHGI+ NWDDMEKIWHHTFYNELRV PEEHP L TEAPLNPK+NREKMT
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 380 IMFETLNSPAMY 415
I+FET N+PA Y
Sbjct: 122 IIFETFNAPAFY 133
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 145 bits (352), Expect = 2e-36
Identities = 67/130 (51%), Positives = 89/130 (68%), Gaps = 1/130 (0%)
Frame = +2
Query: 26 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 205
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 206 ILTLKYPIEHGIITNWDDMEKIWHHTFYN-ELRVXPEEHPVLXTEAPLNPKANREKMTXI 382
+L ++ PIE GII NW DME+IW + + + +L PEEHP+L TE PL N+EK+
Sbjct: 68 LLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEY 127
Query: 383 MFETLNSPAM 412
+ETLN PA+
Sbjct: 128 FYETLNVPAL 137
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 126 bits (303), Expect = 2e-30
Identities = 59/130 (45%), Positives = 86/130 (66%), Gaps = 2/130 (1%)
Frame = +2
Query: 32 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 205
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 206 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVXPEEHPVLXTEAPLNPKANREKMTXIM 385
+L +KYP+E+GII ++++M ++W +TF+ +L++ P +L TE P+NP ANREKM M
Sbjct: 64 LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETM 123
Query: 386 FETLNSPAMY 415
FE +Y
Sbjct: 124 FERYGFGGVY 133
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 100 bits (239), Expect = 1e-22
Identities = 57/150 (38%), Positives = 77/150 (51%), Gaps = 24/150 (16%)
Frame = +2
Query: 38 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 166
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 167 ------DSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVXPEEHPV 325
D ++G++A K +L YPI HG I NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 326 LXTEAPLNPKANREKMTXIMFETLNSPAMY 415
L TE PLNP NRE IMFE+ N +Y
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLY 156
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 84.2 bits (199), Expect = 7e-18
Identities = 47/131 (35%), Positives = 69/131 (52%)
Frame = +2
Query: 23 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 202
D+V+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 203 GILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVXPEEHPVLXTEAPLNPKANREKMTXI 382
G + +K I +G + NWD +W + +L+ P EHP+L TE NP NR K
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 383 MFETLNSPAMY 415
MFE+L PA Y
Sbjct: 121 MFESLRCPATY 131
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 81.4 bits (192), Expect = 5e-17
Identities = 45/136 (33%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
Frame = +2
Query: 8 FKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 187
F+ +D+ LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++
Sbjct: 18 FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGND 72
Query: 188 AQSKRGILTL-KYPIEHGIITNWDDMEKIWHHTFYNELRVXPEEHPVLXTEAPLNPKANR 364
+ G ++ + P E +I+NWD ME++ +TF +L + EHP+ TE NP R
Sbjct: 73 TLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVR 131
Query: 365 EKMTXIMFETLNSPAM 412
MT ++FE N+P++
Sbjct: 132 STMTELLFELYNAPSV 147
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 72.5 bits (170), Expect = 2e-14
Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Frame = +2
Query: 23 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 202
+++ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 203 GI--LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVXPEEHPVLXTEAPLNPKANREKMT 376
I + +K +GII +W+ W +L+V P E+ ++ TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 377 XIMFETLNSPAMY 415
FE L+ PA Y
Sbjct: 122 EAAFEQLHVPAFY 134
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.072
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 83 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 226
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.9 bits (59), Expect = 0.67
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Frame = +2
Query: 38 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 217
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 218 KYPIEH--GIITNWDDMEKIWHHTFYNELRVXPE--EHPVLXTEAPLNPKANREKMTXIM 385
++ H G + +W +W N + P ++ +L T+ + ++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 386 FE 391
FE
Sbjct: 118 FE 119
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.5 bits (58), Expect = 0.88
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 284 FYNELRVXPEEHPVLXTE--APLNPKANREKMTXIMFETLNSP 406
+Y L E+HP+L T+ A L P+ + ++ I ++ N+P
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.5 bits (58), Expect = 0.88
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +2
Query: 224 PIEHGIITNWDDMEKIWHHTFYNELRVXPEE----HPVLXTEAPLNPKANREKMTXIMFE 391
PI+ G + +W+ ++ W H Y+ L P + +PV +RE T FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 392 TLNSP 406
P
Sbjct: 172 ECQVP 176
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 4.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 279 WCQIFS-MSSQLVMIPCSMGYFRVRIPLLL-WASSPT*ESFWPIPTITPWW 133
WC+ S + SQ+ + +G F PL L WA + + P ITPWW
Sbjct: 304 WCKPSSAVLSQIFGVKTGLGLF----PLTLDWAQISSLSN----PLITPWW 346
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 4.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 143 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 229
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 6.2
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +2
Query: 50 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 202
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +2
Query: 239 IITNWDDME-KIWH--HTFYNELRVXPEEHPVLXTEAPLNP 352
+I + DD +W+ HTF+++ + P EH ++ +++ +NP
Sbjct: 271 VIGSADDRTLNVWNLRHTFHHKGKTRPPEHRIV-SQSIINP 310
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 24.2 bits (50), Expect = 8.2
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +2
Query: 221 YPIEHGIITNWDDMEKIWHHTFYNELRVXPE 313
YP G++ +W ++E + E+R+ P+
Sbjct: 244 YPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 126 RPTMDGKTARGASSPAKPALHMPEPL 49
RP+ DG+ A G A P++ P P+
Sbjct: 950 RPSNDGRKASGPRPAAPPSIPPPLPV 975
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,597
Number of Sequences: 5004
Number of extensions: 30451
Number of successful extensions: 99
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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