Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31589
(416 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 285 8e-78
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 281 2e-76
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 278 1e-75
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 278 1e-75
SB_56| Best HMM Match : Actin (HMM E-Value=0) 277 4e-75
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 186 9e-48
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 121 3e-28
SB_54| Best HMM Match : Actin (HMM E-Value=0) 68 3e-12
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 59 1e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 57 7e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 56 1e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 54 4e-08
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 53 1e-07
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 4e-07
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 49 2e-06
SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.22
SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6) 30 0.67
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7) 28 2.7
SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 28 3.6
SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085) 28 3.6
SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9) 28 3.6
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.7
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 27 4.7
SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09) 27 6.2
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 6.2
SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2) 27 6.2
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_37150| Best HMM Match : 7tm_1 (HMM E-Value=0.011) 27 8.2
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 27 8.2
SB_23441| Best HMM Match : IncA (HMM E-Value=2.5) 27 8.2
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 285 bits (700), Expect = 8e-78
Identities = 129/134 (96%), Positives = 130/134 (97%)
Frame = +2
Query: 14 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 193
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 194 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVXPEEHPVLXTEAPLNPKANREKM 373
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRV PEEHPVL TEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 374 TXIMFETLNSPAMY 415
T IMFET NSPAMY
Sbjct: 121 TQIMFETFNSPAMY 134
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 281 bits (689), Expect = 2e-76
Identities = 126/134 (94%), Positives = 129/134 (96%)
Frame = +2
Query: 14 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 193
M DDD+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 194 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVXPEEHPVLXTEAPLNPKANREKM 373
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRV PEEHPVL TEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 374 TXIMFETLNSPAMY 415
T IMFET NSPAMY
Sbjct: 121 TQIMFETFNSPAMY 134
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 278 bits (682), Expect = 1e-75
Identities = 126/134 (94%), Positives = 129/134 (96%)
Frame = +2
Query: 14 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 193
M DD++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 194 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVXPEEHPVLXTEAPLNPKANREKM 373
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRV PEEHPVL TEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 374 TXIMFETLNSPAMY 415
T IMFET NSPAMY
Sbjct: 121 TQIMFETFNSPAMY 134
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 278 bits (682), Expect = 1e-75
Identities = 126/132 (95%), Positives = 128/132 (96%)
Frame = +2
Query: 20 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 199
+DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 200 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVXPEEHPVLXTEAPLNPKANREKMTX 379
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRV PEEHPVL TEAPLNPKANREKMT
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 380 IMFETLNSPAMY 415
IMFET NSPAMY
Sbjct: 122 IMFETFNSPAMY 133
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 277 bits (678), Expect = 4e-75
Identities = 125/132 (94%), Positives = 128/132 (96%)
Frame = +2
Query: 20 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 199
+D+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 200 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVXPEEHPVLXTEAPLNPKANREKMTX 379
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRV PEEHPVL TEAPLNPKANREKMT
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 380 IMFETLNSPAMY 415
IMFET NSPAMY
Sbjct: 122 IMFETFNSPAMY 133
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 186 bits (452), Expect = 9e-48
Identities = 84/89 (94%), Positives = 86/89 (96%)
Frame = +2
Query: 20 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 199
DDDVAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 200 RGILTLKYPIEHGIITNWDDMEKIWHHTF 286
RGILTLKYPIEHGI+TNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 30.3 bits (65), Expect = 0.67
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 359 NREKMTXIMFETLNSPAMY 415
N + M IMFET NSPAMY
Sbjct: 78 NWDDMEKIMFETFNSPAMY 96
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 121 bits (291), Expect = 3e-28
Identities = 57/131 (43%), Positives = 81/131 (61%), Gaps = 3/131 (2%)
Frame = +2
Query: 32 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 205
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 206 ILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVXPEEHPVLXTEAPLNPKANREKMTXI 382
+L + YP+++GI+ NWDDM+ +W +TF +++ + P VL TE PLNP NREKM +
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 383 MFETLNSPAMY 415
MFE +Y
Sbjct: 127 MFENYQFEGVY 137
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 68.1 bits (159), Expect = 3e-12
Identities = 30/50 (60%), Positives = 37/50 (74%)
Frame = +2
Query: 266 KIWHHTFYNELRVXPEEHPVLXTEAPLNPKANREKMTXIMFETLNSPAMY 415
K+W H F ++LRV E+ PVL TEAPLNPK NRE+M +MFE+ N P MY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMY 2178
Score = 59.7 bits (138), Expect = 1e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 38 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 139
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.3 bits (137), Expect = 1e-09
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = +2
Query: 38 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 139
LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 56.8 bits (131), Expect = 7e-09
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = +2
Query: 224 PIEHGIITNWDDMEKIWHHTFYNELRVXPEEHPVLXTEAPLNPKANREKMTXIMFETLNS 403
PI+ G+I +WD EKI + + ++ HP+L +EA N + REK+T +MFE N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 404 PAMY 415
PA +
Sbjct: 63 PAFF 66
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 56.0 bits (129), Expect = 1e-08
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Frame = +2
Query: 8 FKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 178
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 179 GDEAQSKRGILTL 217
GD A +K G++ L
Sbjct: 753 GDAAVAKSGVMHL 765
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 54.4 bits (125), Expect = 4e-08
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +2
Query: 152 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVXPEEH 319
G+ D ++GDEA K T K+PI H I+ +WD ME+ W + LR PE+H
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDH 332
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 52.8 bits (121), Expect = 1e-07
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +2
Query: 314 EHPVLXTEAPLNPKANREKMTXIMFETLNSPAMY 415
+HPVL TEAPLNP+ NREK + FET N PA++
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALF 159
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 50.8 bits (116), Expect = 4e-07
Identities = 21/39 (53%), Positives = 31/39 (79%)
Frame = -2
Query: 136 VARATHDGREDGAGRVVAGETGLAHAGAIVDYKRSNIVV 20
+AR+ DG E+G+G +V+GETGLAH GAI+D + +I+V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 48.8 bits (111), Expect = 2e-06
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +2
Query: 29 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 208
+A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 233 MATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKDY 284
Query: 209 LTLKY--PIEHGIITNWDDMEKIWHHTFYNE 295
L Y P + G + NWD ++IW +TF E
Sbjct: 285 SALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 32.7 bits (71), Expect = 0.12
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 45 STMAPACARPVSPATTRPAPSSRPSWVALATRA*WSVWARKTPTWVTRP 191
S P+ R TT+P P +PSWV + + W TW RP
Sbjct: 36 SPSKPSDTRIADTTTTKPFPGYQPSWVKVK----YGAWYLNPKTWKARP 80
>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 31.9 bits (69), Expect = 0.22
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 9 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 113
S C T+L+R T+ APA +P+SPAT P +R
Sbjct: 632 SSCLATLLVRPLETIPAPAPTKPISPATPASGPPTR 667
>SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6)
Length = 697
Score = 30.3 bits (65), Expect = 0.67
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 9 SRCATTMLLR-L*STMAPACARPVSPATTRPAPSSR 113
S C T+L+R L +T APA P SPAT P R
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPATPASGPPIR 56
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 215 LKYPIEHGIITNWDDMEKIWHHTFYNELRVXPE--EHPVLXTEAPLNPKANRE 367
L+ P + ++T+++ E++ H F + P HPV+ TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)
Length = 682
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 9 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 113
S C T+L+R T+ APA P SPAT P R
Sbjct: 112 SSCLATLLVRPLETIPAPAPTTPTSPATPASGPPIR 147
>SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 9 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 113
S C T+L+R T+ APA P SPAT P R
Sbjct: 72 SSCLATLLVRPLETIPAPAPTTPTSPATPASGPPIR 107
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 141 PWWRGRPTMDGKTARGASSPAKPALHMPEP 52
P W + G T R PAKP+L++P P
Sbjct: 530 PKWLQQVKDGGNTNRRTRIPAKPSLNLPSP 559
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 27.9 bits (59), Expect = 3.6
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 9 SRCATTMLLR-L*STMAPACARPVSPAT 89
S C T+L+R L +T APA P SPAT
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPAT 48
>SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
Length = 1411
Score = 27.9 bits (59), Expect = 3.6
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 9 SRCATTMLLR-L*STMAPACARPVSPAT 89
S C T+L+R L +T APA P SPAT
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPAT 48
>SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 461
Score = 27.9 bits (59), Expect = 3.6
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 9 SRCATTMLLR-L*STMAPACARPVSPAT 89
S C T+L+R L +T APA P SPAT
Sbjct: 14 SSCLATLLVRPLETTPAPAPTTPTSPAT 41
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 11 KMCDDDVAALVVDNG-SGMCKAGFAGD 88
++CD D + +N MCKAG+ GD
Sbjct: 487 RLCDKDAVCRLENNAIKCMCKAGYTGD 513
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 135 WRGRPTMDGKTARGASSPAKPALHMPEP 52
W + G T R PAKPAL++P P
Sbjct: 72 WLQQVKDGGNTNRRTRIPAKPALNLPSP 99
>SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09)
Length = 645
Score = 27.1 bits (57), Expect = 6.2
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -2
Query: 376 GHLLPVGLGVEGGFGXQHGVLLGXDTQLI-VEGVVPDLLHVIPVGDDTVLDGVLQSXDTS 200
G +L V LG+ GF G+ + T I + GV+P L+ I + D ++ + D S
Sbjct: 157 GGILAVALGILAGF----GLAMAVGTPFISLAGVLPFLILGIGIDDMFIIINEMDRQDNS 212
Query: 199 LAL 191
L++
Sbjct: 213 LSV 215
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 111 GKTARGASSPAKPALHMPEP 52
G T R PAKPAL++P P
Sbjct: 80 GNTNRRTRIPAKPALNLPSP 99
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 32 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 136
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2)
Length = 782
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 9 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 113
S C T+++R T+ APA P SPAT P R
Sbjct: 51 SSCLATLVVRPLETIPAPAPTTPTSPATPASGPPIR 86
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 9 SRCATTMLLR-L*STMAPACARPVSPAT 89
S C T L+R L +T APA P SPAT
Sbjct: 523 SSCLATFLVRTLETTPAPAPTTPTSPAT 550
>SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 26.6 bits (56), Expect = 8.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 7 VQDVRRRCCCACSRQW 54
V+D+ CCAC R+W
Sbjct: 108 VKDILSSVCCACPRRW 123
>SB_37150| Best HMM Match : 7tm_1 (HMM E-Value=0.011)
Length = 211
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 9 SRCATTMLLR-L*STMAPACARPVSPATTRPAPSSR 113
S C T+L+R L + APA P SPAT A R
Sbjct: 148 SSCLATLLVRPLETAPAPAPTTPTSPATPASAAPIR 183
>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
Length = 1258
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 33 LRL*STMAPACARPVSPATTRPAP 104
L+L ST+ P+ P++PA P P
Sbjct: 185 LQLLSTLIPSTTAPINPAAINPTP 208
>SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)
Length = 927
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 228 MGYFRVRIPLLLWASSPT*ESFWPIPTITP 139
MGY ++ P +W + + P PT+TP
Sbjct: 363 MGYVVIKAPYPVWTLLSSTPTITPTPTVTP 392
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,700,997
Number of Sequences: 59808
Number of extensions: 266313
Number of successful extensions: 858
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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