Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31589
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   0.60 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.8  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   4.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   9.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 0.60
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 394 GLKHDXGHLLPVGLGVEGGFG 332
           GLK+  G  + VG+G+ GG G
Sbjct: 819 GLKNMAGVFIVVGVGIIGGIG 839


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 304 DTQLIVEGVVPDLLHVI 254
           + Q +V+ V PD+LH+I
Sbjct: 21  NNQTVVDKVPPDMLHLI 37


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 296  LRVXPEEHPVLXTEAPLNPKANREKM 373
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 59  GMCKAGFAGD 88
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 185 RHPRRSLSGPYRPSRPGGEG 126
           +HP R   G  R     GEG
Sbjct: 389 KHPNRRARGQLRTKIESGEG 408


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 214 SEVPHRARYHHQ 249
           S+ PH+  +HHQ
Sbjct: 807 SQPPHQQLHHHQ 818


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,096
Number of Sequences: 438
Number of extensions: 1991
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)