Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31586
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...    28   0.95 
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    26   3.8  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    25   6.7  

>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 246 ILQRGICNINLNRKKNEWSSYI 181
           +++  ICN NL R   EWS YI
Sbjct: 278 VVKHHICNANLMRNGAEWSVYI 299


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 294 QYCFYRWELCNISIINILQRGICNINLNRKKNEWSSYIL*IH 169
           Q   Y W L  ISI +I   G     + +K+ E S Y L I+
Sbjct: 233 QQVLYNWNLTEISISSIETYGPAGAEMLQKEKEVSLYKLSIN 274


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 123 TMXNYLDTSFGLYKKCEFTICMNSIRFFF 209
           ++ NY+DT+FG  +  + TI  + +RF F
Sbjct: 415 SLLNYIDTAFGGREYLKKTILTDFMRFGF 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,540
Number of Sequences: 5004
Number of extensions: 29562
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)