Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31586
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0128 - 13969118-13969222,13969329-13969460,13969558-139696...    28   5.1  
08_01_1024 - 10349061-10349200,10349373-10350040,10350478-103505...    28   5.1  
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749...    28   5.1  
01_06_0289 + 28233327-28233815                                         28   5.1  
09_02_0107 + 4354470-4354589,4355058-4355156,4355292-4355596,435...    27   6.8  

>12_02_0128 -
           13969118-13969222,13969329-13969460,13969558-13969671,
           13971843-13971941,13972035-13972171,13972505-13972598,
           13973248-13973355,13973442-13973537,13973673-13973845,
           13974818-13975172,13975308-13975442,13975524-13975667,
           13975762-13976436,13976552-13976617,13976710-13976877
          Length = 866

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 308 YYKYCSFYCLRNNEILLFS*NLKHLHPMILPITYDDISTGH 430
           YY    F CL +N   +F+ ++K  H + L   YD+ S  H
Sbjct: 785 YYDLLIFPCLYDNHWFVFTVDIKGHHFIFLDSIYDENSKYH 825


>08_01_1024 -
           10349061-10349200,10349373-10350040,10350478-10350591,
           10351956-10352032
          Length = 332

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 255 IINILQRGICNINLNRKKNEWSS 187
           +I IL  GIC+ +L+  KNEW +
Sbjct: 34  VIKILYCGICHSDLHSIKNEWKN 56


>07_01_0893 +
           7484598-7484744,7484837-7484902,7494387-7494530,
           7494860-7495235,7495904-7496017,7496282-7496454,
           7496562-7496669,7497311-7497377,7497791-7497904,
           7498121-7498257,7498727-7498813,7498962-7498986,
           7499044-7499266,7499770-7499947,7500039-7500152,
           7500249-7500380,7500488-7500588,7500720-7500933
          Length = 839

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 308 YYKYCSFYCLRNNEILLFS*NLKHLHPMILPITYDDISTGH 430
           YY    F CL +N   +F+ ++K  H + L   YD+ S  H
Sbjct: 688 YYDLLIFPCLYDNHWFVFTVDIKGHHFVFLDSIYDENSKYH 728


>01_06_0289 + 28233327-28233815
          Length = 162

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 493 RAFGSWGSGDGEFKGLEGIAVMTGGNIIVCDRE 395
           R+ G  GSGDG+  GL G     GG    C+ E
Sbjct: 130 RSKGGGGSGDGDCGGLRG-GARGGGAAAACEEE 161


>09_02_0107 +
           4354470-4354589,4355058-4355156,4355292-4355596,
           4356101-4356278,4356368-4356481,4356543-4356674,
           4356784-4356888
          Length = 350

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 308 YYKYCSFYCLRNNEILLFS*NLKHLHPMILPITYDDISTGH 430
           YY+   F CL +N   +F+ ++K  H + L   YD+ +  H
Sbjct: 269 YYELLIFPCLYDNHWFVFTVDIKGHHFVFLDSIYDENNKYH 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,424,950
Number of Sequences: 37544
Number of extensions: 174045
Number of successful extensions: 300
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)