Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31586
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35670.1 68415.m04375 transcription factor, putative / fertil...    27   5.7  
At4g37970.1 68417.m05366 mannitol dehydrogenase, putative simila...    27   7.5  
At4g12840.1 68417.m02012 expressed protein contains Pfam profile...    27   9.9  
At4g05490.1 68417.m00830 F-box family protein (FBL22) contains s...    27   9.9  

>At2g35670.1 68415.m04375 transcription factor, putative /
           fertilization-independent seed 2 protein (FIS2)
           identical to GB:AF096095
          Length = 632

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 368 NLKHLHPMILPITYDDISTGHDSDSL*SLKFPVSGAPRAKRPEE 499
           N+K L+ +++ +  DD+  G ++DS       VS  PRA   E+
Sbjct: 96  NVKKLNVLLMELDLDDLPRGTENDSTHVNDDNVSSPPRAHSSEK 139


>At4g37970.1 68417.m05366 mannitol dehydrogenase, putative similar
           to ELI3-2 (SP|Q02972), sinapyl alcohol dehydrogenase
           (Populus tremuloides) (gi:14279694); contains Pfam
           zinc-binding dehydrogenase domain PF00107
          Length = 363

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 252 INILQRGICNINLNRKKNEWSSYI 181
           + +L  GIC+ +L+  KNEW S I
Sbjct: 43  VKVLYCGICHSDLHCLKNEWHSSI 66


>At4g12840.1 68417.m02012 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 413

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 207 KKNEWSSYIL*IHIFYINQSLCLNNF 130
           K+ EWS     IHI  +NQ+ CLN F
Sbjct: 151 KEFEWSDTA--IHISVVNQTKCLNMF 174


>At4g05490.1 68417.m00830 F-box family protein (FBL22) contains
           similarity to N7 protein GI:3273101 from [Medicago
           truncatula]
          Length = 307

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = -1

Query: 291 YCFYRWELCNISIINILQRGICNINLNRKKNEWSSYI 181
           YC Y  E C   ++++ Q G+   N+++ + + +S +
Sbjct: 80  YCIYAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLL 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,690,289
Number of Sequences: 28952
Number of extensions: 146122
Number of successful extensions: 259
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)