Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31585
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)                    29   3.0  
SB_37998| Best HMM Match : zf-FPG_IleRS (HMM E-Value=3.3)              27   6.9  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    27   6.9  

>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
          Length = 1650

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 340  NVRCRRLESTLVSDVGHSVSNTVRADVRKFSANLKSFVFS 221
            N+   R+   +  DV  S  NTV+ D++    +LKSFV S
Sbjct: 894  NLVALRIAGRVPQDVTGSTRNTVQKDIQGIEDSLKSFVES 933


>SB_37998| Best HMM Match : zf-FPG_IleRS (HMM E-Value=3.3)
          Length = 233

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -3

Query: 331 CRRLESTLVSDVGHSVSNTVRADVRKFSANLKSFVFS--ANVLQLTGFLS 188
           CRR  +  V+D+ H  S+      +  + N+K FVFS   N +Q+  FL+
Sbjct: 105 CRRFIAKTVNDICHIESSVYPIICKGITVNIK-FVFSELPNDIQMLAFLA 153


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 121 QDNDNIGVEGYNTGYETSNGNQGSGN 198
           +D++++G E  N GYE  NG  G  N
Sbjct: 31  EDDNSVGDEDDNVGYEGDNGVGGDDN 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,586,354
Number of Sequences: 59808
Number of extensions: 217207
Number of successful extensions: 513
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)