Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31585
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26100.2 68416.m03250 regulator of chromosome condensation (R...    29   1.4  
At3g26100.1 68416.m03251 regulator of chromosome condensation (R...    29   1.4  
At2g32370.1 68415.m03956 homeobox-leucine zipper family protein ...    25   3.7  
At4g28880.1 68417.m04127 casein kinase, putative similar to simi...    27   5.7  
At2g17230.1 68415.m01990 phosphate-responsive 1 family protein s...    27   7.5  
At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containi...    27   9.9  
At3g52710.1 68416.m05807 expressed protein predicted protein, Ar...    27   9.9  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    27   9.9  

>At3g26100.2 68416.m03250 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 532

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 352 LSLGNVRCRRLESTLVSDVGHSVSNTVRADVRKFSAN 242
           L  G   CRR +S  V+  GHSV+ T + +V  F  N
Sbjct: 134 LLAGEACCRREKSQAVAGPGHSVAVTSKGEVYTFGYN 170


>At3g26100.1 68416.m03251 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 432

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 352 LSLGNVRCRRLESTLVSDVGHSVSNTVRADVRKFSAN 242
           L  G   CRR +S  V+  GHSV+ T + +V  F  N
Sbjct: 34  LLAGEACCRREKSQAVAGPGHSVAVTSKGEVYTFGYN 70


>At2g32370.1 68415.m03956 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           HD-Zip homeo domain OCL5 protein (GI:8920427) [Zea
           mays]; contains Pfam PF00046: Homeobox domain and Pfam
           PF01852: START domain
          Length = 721

 Score = 24.6 bits (51), Expect(2) = 3.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 124 DNDNIGVEGYNTGYETSNGNQGSGNRSTEEH 216
           +N+N G +  N G ++ + +  SGN S+  H
Sbjct: 25  NNNNGGTDNTNAGNDSGDQDFDSGNTSSGNH 55



 Score = 21.8 bits (44), Expect(2) = 3.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 334 SHSQGLSQPNRPQHLVQKYS 393
           +H +GL     P+H  +KY+
Sbjct: 54  NHGEGLGNNQAPRHKKKKYN 73


>At4g28880.1 68417.m04127 casein kinase, putative similar to similar
           to casein kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158; contains protein kinase domain,
           Pfam:PF00069
          Length = 415

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 139 GVEGYNTGYETSNGNQGSGNRS 204
           G    N G ETSN   GSGNR+
Sbjct: 383 GTSKRNVGPETSNSGYGSGNRT 404


>At2g17230.1 68415.m01990 phosphate-responsive 1 family protein
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 363

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 490 FFFFFLLKRMYYHQDRITDRLDSNNKRKLFK*MSIFGLDAGACSVDL 350
           FFFFF L   +Y    IT  L +NN  K    ++   + + A  + L
Sbjct: 10  FFFFFTLSSFFY----ITSSLQNNNNNKHTATVNSLNIPSAAAEITL 52


>At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 554

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 263 IGPDGVTYAVTYVANEGGFQPSAPHIPKA 349
           +G  G +   ++VA   GF+PS P  P A
Sbjct: 413 LGASGSSSGNSFVAPRSGFEPSIPSAPPA 441


>At3g52710.1 68416.m05807 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 289

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 351 KSTEQAPASSPKILIHLKSFRLLLESKRSVIR 446
           K    AP S+P    +  S R+ L+SK S+IR
Sbjct: 74  KGNSSAPISNPNTNPNSSSHRISLKSKASIIR 105


>At1g44120.1 68414.m05096 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2114

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 336  TFPRLKSTEQAPASSPKILIHLKS 407
            TFP+L+S+E A A  P ++  LKS
Sbjct: 1899 TFPKLRSSEAATACIPHLIGALKS 1922


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,844,599
Number of Sequences: 28952
Number of extensions: 151895
Number of successful extensions: 411
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)