Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31583
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    28   0.95 
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   2.9  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   8.9  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   8.9  

>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 256 LNYNGEITTELHCRKEERCFAFF 324
           +++  E+ +ELH  + ERCFA+F
Sbjct: 242 IHFKREMGSELHREQFERCFAYF 264


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 289 HCRKEERCFAFFCRVHCSIVLPL 357
           HCR   RC   FC +HC   +PL
Sbjct: 177 HCR---RCGDIFCALHCDRNIPL 196


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 513 PFIRGLCHFLLRTSKIFVLAVATSV 439
           P + GLC F+    KIF+  +AT +
Sbjct: 89  PKVYGLCRFIPTEEKIFLDLIATQL 113


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 382 TYPELKNFKEVKQWNSVRG 326
           TYPE  N+K ++ WN+  G
Sbjct: 134 TYPEDLNYKFMRLWNAAFG 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,767,406
Number of Sequences: 5004
Number of extensions: 31907
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)