Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31583
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0181 + 1237167-1237820,1238053-1238142,1238689-1238841,123...    30   1.3  
04_04_0852 + 28724891-28725184,28725683-28725801,28726868-28727294     27   8.9  

>02_01_0181 +
           1237167-1237820,1238053-1238142,1238689-1238841,
           1238934-1239045,1239460-1239623,1239709-1240047
          Length = 503

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -3

Query: 274 FLHCNSIEDEFRLNAAFLTFVYSKK--VYLGHVNEKGNNILVHKDDFLLT-SFKRCSDKV 104
           F   +S  DE    A++L     +K  VYL ++   G+ +   +DDF  +   KR + K 
Sbjct: 241 FYCSHSYHDELLWAASWLHLASPEKKDVYLSYIGSNGHALGAEQDDFTFSWDDKRVATKG 300

Query: 103 FGQFRVKKLENY 68
           F Q R   L+ Y
Sbjct: 301 FLQSRADGLQLY 312


>04_04_0852 + 28724891-28725184,28725683-28725801,28726868-28727294
          Length = 279

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 187 HVNEKGNNILVHKDDFLLTSFKRCSDKVFGQFRV 86
           ++NE GN IL H  DF+++S  + ++  F   ++
Sbjct: 216 YLNEPGNWILYHVGDFVVSSSDQLTNLKFSMMQI 249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,816,202
Number of Sequences: 37544
Number of extensions: 158500
Number of successful extensions: 264
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)