Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31583
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_24568| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_53479| Best HMM Match : Zot (HMM E-Value=1.1)                       27   9.2  
SB_30162| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 237 NLNSSSIELQWRNNYRITLQKRRTMLC 317
           NL +     QWRNNY++   +R  ++C
Sbjct: 553 NLQAYMKYFQWRNNYKLVATRRACIMC 579


>SB_24568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 172 GNNILVHKDDFLLTSFKRCSDKVFGQFRVKKLENY*HCN 56
           G+ +L  K+D L T + +C D +  +FR  KL+    C+
Sbjct: 606 GHGLLQAKEDLLSTGYSKCEDYI-NEFREGKLQTQPGCS 643


>SB_53479| Best HMM Match : Zot (HMM E-Value=1.1)
          Length = 251

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 250 LQLNYNGEITTELHC 294
           L+LN  G+ITT LHC
Sbjct: 145 LELNLRGDITTTLHC 159


>SB_30162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 250 LQLNYNGEITTELHC 294
           L+LN  G+ITT LHC
Sbjct: 39  LELNLRGDITTTLHC 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,256,528
Number of Sequences: 59808
Number of extensions: 205840
Number of successful extensions: 411
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)