Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31583
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067607-3|AAF98607.1|  590|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z36948-4|CAA85411.3|  615|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z68217-3|CAA92466.2|  466|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U55367-1|AAA97987.1|  281|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AF067607-3|AAF98607.1|  590|Caenorhabditis elegans Hypothetical
           protein C18H7.6 protein.
          Length = 590

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 284 NYTAEKKNDALHFF--AAYTVPLFYLFKIL 367
           N+   K ND  +FF  A   +P+F+LFK L
Sbjct: 494 NFDPRKSNDTYYFFITAQTPIPIFFLFKSL 523


>Z36948-4|CAA85411.3|  615|Caenorhabditis elegans Hypothetical
           protein D2089.4a protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 52  DSYSVNNFLVF*HEIGQIPYRNSV*KTLVENHLYALEYYFLFRL 183
           D+ SV N  V   E+G     NSV +T++EN ++ +    L++L
Sbjct: 208 DTESVANGSVSNFEVGTQQQPNSVLRTIIENMMFPVSLDVLYQL 251


>Z68217-3|CAA92466.2|  466|Caenorhabditis elegans Hypothetical
           protein F58G6.4 protein.
          Length = 466

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 231 AFNLNSSSIELQWRNNYRITLQKR 302
           +FN N+  + +QW   Y + L KR
Sbjct: 178 SFNYNTGEVRMQWNQPYPVILLKR 201


>U55367-1|AAA97987.1|  281|Caenorhabditis elegans Hypothetical
           protein C55H1.1 protein.
          Length = 281

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -3

Query: 385 VTYPELKNFKEVKQWNSVRGKKMQSIVLLFCSVIL*LFLH 266
           V   E+K+ +   +W+ V  K+ Q++++ F S+I+ + LH
Sbjct: 216 VNMEEIKSKRLPVEWSKVLDKRPQTMLISFGSLIMWICLH 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,634,954
Number of Sequences: 27780
Number of extensions: 175165
Number of successful extensions: 302
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)