Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31583
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   2.5  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    23   2.5  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   2.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.7  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 190 GHVNEKGNNILVHKDDFLLTSFKRCSDK 107
           G    +GN +     D L T  K+C+DK
Sbjct: 55  GRCTAEGNELKRVLPDALATDCKKCTDK 82


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 190 GHVNEKGNNILVHKDDFLLTSFKRCSDK 107
           G    +GN +     D L T  K+C+DK
Sbjct: 55  GRCTAEGNELKRVLPDALATDCKKCTDK 82


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 190 GHVNEKGNNILVHKDDFLLTSFKRCSDK 107
           G    +GN +     D L T  K+C+DK
Sbjct: 55  GRCTAEGNELKRVLPDALATDCKKCTDK 82


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 240 LNSSSIELQWRNNYRITLQKRRT 308
           L    IEL    NYR+T+++  T
Sbjct: 842 LKGGKIELNPSTNYRVTVKREVT 864


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 240 LNSSSIELQWRNNYRITLQKRRT 308
           L    IEL    NYR+T+++  T
Sbjct: 838 LKGGKIELNPSTNYRVTVKREVT 860


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 309 MLCIFLPRTLFHCFTS 356
           ML IF+PR ++  F S
Sbjct: 412 MLIIFIPRNIYENFIS 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,791
Number of Sequences: 438
Number of extensions: 2292
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)