Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31583
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16720.1 68416.m02135 zinc finger (C3HC4-type RING finger) fa...    29   1.9  
At5g55630.2 68418.m06937 outward rectifying potassium channel (K...    28   4.3  
At5g55630.1 68418.m06936 outward rectifying potassium channel (K...    28   4.3  
At2g23530.1 68415.m02808 expressed protein ; expression supporte...    28   4.3  
At3g16630.2 68416.m02126 kinesin motor family protein similar to...    27   7.5  
At3g16630.1 68416.m02125 kinesin motor family protein similar to...    27   7.5  
At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containi...    27   7.5  

>At3g16720.1 68416.m02135 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 304

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 391 PLVTYPELKNFKEVKQWNSVRGKKMQS-IVLLFCSVIL*LFLH 266
           P+   PE  NF   K + ++ GK M S IV+LF  VIL +FLH
Sbjct: 8   PIPFRPEDNNFSGSKTY-AMSGKIMLSAIVILFFVVILMVFLH 49


>At5g55630.2 68418.m06937 outward rectifying potassium channel
           (KCO1) identical to kco1 [Arabidopsis thaliana]
           gi|2230761|emb|CAA69158 of the 2 pore, 4 transmembrane
           (2P/4TM) K+ channel family, PMID:11500563
          Length = 363

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -3

Query: 340 NSVRGKKMQSIV--LLFCSVIL*LFLHCNSIEDEFRLNAAFLTFVYSKKVYLGHVNEKGN 167
           + + G K   +V  L FC V +    + + + +          FV+S  V +GH+  +  
Sbjct: 99  DQISGHKTSGVVDALYFCIVTMTTVGYGDLVPNSSASRLLACAFVFSGMVLVGHLLSRAA 158

Query: 166 NILVHKDDFLL 134
           + LV K + LL
Sbjct: 159 DYLVEKQEALL 169


>At5g55630.1 68418.m06936 outward rectifying potassium channel
           (KCO1) identical to kco1 [Arabidopsis thaliana]
           gi|2230761|emb|CAA69158 of the 2 pore, 4 transmembrane
           (2P/4TM) K+ channel family, PMID:11500563
          Length = 363

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -3

Query: 340 NSVRGKKMQSIV--LLFCSVIL*LFLHCNSIEDEFRLNAAFLTFVYSKKVYLGHVNEKGN 167
           + + G K   +V  L FC V +    + + + +          FV+S  V +GH+  +  
Sbjct: 99  DQISGHKTSGVVDALYFCIVTMTTVGYGDLVPNSSASRLLACAFVFSGMVLVGHLLSRAA 158

Query: 166 NILVHKDDFLL 134
           + LV K + LL
Sbjct: 159 DYLVEKQEALL 169


>At2g23530.1 68415.m02808 expressed protein ; expression supported
           by MPSS
          Length = 555

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 353 GKTMEQCTRQKNAKHRSSFLQCNSV 279
           GKT  QC RQK   HR+   +CN V
Sbjct: 159 GKTCHQC-RQKTMGHRTQCSECNLV 182


>At3g16630.2 68416.m02126 kinesin motor family protein similar to
           mitotic centromere-associated kinesin GB:AAC27660 from
           [Homo sapiens]; contains Pfam profile PF00225: Kinesin
           motor domain
          Length = 794

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 223 EKQRLI*IHLQLNYNGEITTE 285
           EKQRL  +   LN+NGE T+E
Sbjct: 72  EKQRLFQLMRNLNFNGESTSE 92


>At3g16630.1 68416.m02125 kinesin motor family protein similar to
           mitotic centromere-associated kinesin GB:AAC27660 from
           [Homo sapiens]; contains Pfam profile PF00225: Kinesin
           motor domain
          Length = 794

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 223 EKQRLI*IHLQLNYNGEITTE 285
           EKQRL  +   LN+NGE T+E
Sbjct: 72  EKQRLFQLMRNLNFNGESTSE 92


>At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 1052

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 259 NYNGEITTELHCRKEERCFAFFCRVHCSIVLP 354
           +Y   +  ELHC K +  F+ FC +  S  +P
Sbjct: 575 HYRERLRNELHCIKFDDAFSLFCEMLQSRPIP 606


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,650,507
Number of Sequences: 28952
Number of extensions: 149137
Number of successful extensions: 321
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)