Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31578
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    28   0.95 
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    28   0.95 
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   3.8  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    26   3.8  
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    25   8.9  
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    25   8.9  
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.9  

>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 21/54 (38%), Positives = 26/54 (48%)
 Frame = -1

Query: 345 RTGISSPLGRRILGQ*PVSRGSFHIIGLTSHILWLRRSSLILARSCWLAYIMIS 184
           RTG SSPLG+           SF ++ LT  +L L   S IL +   L Y  IS
Sbjct: 105 RTGTSSPLGQLFDHGVDAINTSFEVL-LTIELLQLDMFSSILTQFASLLYFYIS 157


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 185 EIMMYANQQLLARMRLERLSHKMCDVKPMMWNEP 286
           +I++YA +QL    R+ R ++ + D  P++W EP
Sbjct: 391 KILLYARRQLT---RMARWNNLIDDSSPLLWREP 421


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 240 RRSSLILARSCWLAYIMISPRRSLFMPYASSVIQ 139
           R+SSLI  +S WL++  +S R      Y   + +
Sbjct: 310 RKSSLISLKSFWLSFYKVSLRYDALYEYLRQIAE 343


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 511 TGEVFNVLRLLQAYNSAVTTLDLSSKDTLSDHHFN 407
           TGEV   L  L    S + TLD SS  T+++  FN
Sbjct: 331 TGEVMYYLSTLMGAMSFIETLDCSSL-TITEEEFN 364


>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 54  KERRTPLRQSITTKLSSV 1
           KE+RT LRQ++ TKL S+
Sbjct: 117 KEKRTFLRQALETKLISL 134


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 282 SFHIIGLTSHILWLRRSSLILARSCWL 202
           SF  IG+ S+I W  R      RS WL
Sbjct: 226 SFATIGVVSNIYWQHRQLGKAGRSRWL 252


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 206 QQLLARMRLERLSHKMCDV-KPMMWNEPLETGYW 304
           Q++LA    E+L      + K +  N PL+T YW
Sbjct: 187 QRILAPKSFEQLEQLEAQIQKKLKSNVPLDTDYW 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,003
Number of Sequences: 5004
Number of extensions: 34962
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)