Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31578
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17227| Best HMM Match : KE2 (HMM E-Value=4.1)                       29   1.7  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)           27   6.9  
SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033)        27   6.9  
SB_25689| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_17227| Best HMM Match : KE2 (HMM E-Value=4.1)
          Length = 162

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 276 GTSP*RPVTGLKSVFPAVMKCPSARTTWSLPRK 374
           G  P + + GLK   P   KCPS+R T SLP K
Sbjct: 14  GAEPSKNLPGLKPS-PKKRKCPSSRRTVSLPPK 45


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/83 (16%), Positives = 39/83 (46%)
 Frame = +2

Query: 245  HKMCDVKPMMWNEPLETGYWPKIRLPSGDEMPVRQNNMVVATKDNLKMKQMMDDVEMMIR 424
            ++ C +  +M N+ ++  +W ++   +G +  V   N ++       + +  +D+E +  
Sbjct: 1456 NECCPLLELMANKAMKERHWERLSNLTGHKFDVENENFLLRNIMEAPLLKHKEDIEDICI 1515

Query: 425  EGILTGKIERRDGTVISLKKSED 493
              +    IE +   V++  KS++
Sbjct: 1516 SAVKEKDIEAKLSQVVADWKSQE 1538


>SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 101 NTYMYYLHMNYPFWMTDDAYGINKERRGE 187
           NT  YY+H+NY  + +D  Y I     G+
Sbjct: 66  NTSSYYIHLNYKDYESDYFYTIGSYNSGD 94


>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
          Length = 721

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/95 (15%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
 Frame = +2

Query: 119 LHMNYPFWMTDDAYGINKERRGEIMMYANQQLLARMRLERLSHKMCDVKPMMWNEPLET- 295
           +H N   WMT    G   +R+G ++ +  +  L ++  +++   +   K + +   ++  
Sbjct: 351 VHTNDKPWMTQKIKGWIAKRQGALVKHGKESPLFKLWRDKVGKAIASAKHVFYRTKVKNL 410

Query: 296 ------GYWPKIRLPSGDEMPVRQNNMVVATKDNL 382
                  +W +++  S D+   R++++++ + D +
Sbjct: 411 KNTNIGRWWKEVKNLSEDQSIFRRSHLLLLSVDTI 445


>SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033)
          Length = 311

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 22/118 (18%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
 Frame = +2

Query: 164 INKERRGEIMMYANQQLLARMRLERLSHKMCDVKPMMWNEPLETGYWPKI--RLPSGDEM 337
           +  + +GE+M    + + A+  +ERL+    D++  +  +  +  +W  +   L +G   
Sbjct: 179 VTSDLQGELMQAREEVIRAQSEVERLARMKEDLEEDLQEKENQMDHWKVLEEELRNGINE 238

Query: 338 PVRQNNMVVATKDNLKMKQMMDDVEMMIREGILTGKIERRDGTVISLKKSEDIENLAR 511
             ++  M+  + +  + K +  + EM      L    E++     + KK+E+    AR
Sbjct: 239 REKELEMLRCSTEEDQEKLISLNTEMESLNKSLRAATEKQKELETTAKKAEEEREQAR 296


>SB_25689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 233 ERLSHKMCDVKPMMWNEPLETGYWPKIRLPSGDEMP 340
           E +   MC  KP     P  TG+ P I     D++P
Sbjct: 289 EAVEKAMCSAKPGKCPPPFSTGFCPDITDVPSDQVP 324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,074,558
Number of Sequences: 59808
Number of extensions: 276806
Number of successful extensions: 659
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)